Detailed information NTG0636093

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: LUA78_RS01825
• Genome accession: NZ_CP089283
• Coordinates: 398979..400187 (+)
• Length: 402 a.a.
• NCBI ID: WP_234618107.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain J99 derivative isolate D1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 393979..405187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUA78_RS01810 (LUA78_01810)	-	396061..396201 (+)	141	WP_000789929.1	hypothetical protein	-
LUA78_RS01815 (LUA78_01815)	-	396194..397330 (+)	1137	WP_234618106.1	VirB8/TrbF family protein	-
LUA78_RS01820 (LUA78_01820)	-	397327..398982 (+)	1656	WP_128057693.1	TrbG/VirB9 family P-type conjugative transfer protein	-
LUA78_RS01825 (LUA78_01825)	comB10	398979..400187 (+)	1209	WP_234618107.1	DNA type IV secretion system protein ComB10	Machinery gene
LUA78_RS01830 (LUA78_01830)	-	400171..402411 (+)	2241	WP_234618108.1	collagen-like protein	-
LUA78_RS01835 (LUA78_01835)	-	402424..403386 (+)	963	WP_234618109.1	hypothetical protein	-
LUA78_RS01840 (LUA78_01840)	-	403403..403678 (+)	276	WP_001278752.1	hypothetical protein	-
LUA78_RS01845 (LUA78_01845)	-	403683..404627 (+)	945	WP_046655417.1	CpaF/VirB11 family protein	-
LUA78_RS01850 (LUA78_01850)	-	404624..405142 (+)	519	WP_046655416.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44932.42 Da
• Isoelectric Point: 9.9996

>NTDB_id=636093 LUA78_RS01825 WP_234618107.1 398979..400187(+) (comB10) [Helicobacter pylori strain J99 derivative isolate D1]
MKQSLLKKIGLGVGGFVGLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATNPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=636093 LUA78_RS01825 WP_234618107.1 398979..400187(+) (comB10) [Helicobacter pylori strain J99 derivative isolate D1]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGGTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAATCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.792	98.01	0.517