Detailed information NTG0636014

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA15_RS06675
• Genome accession: NZ_CP106743
• Coordinates: 1434466..1435470 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1429466..1440470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA15_RS06645 (PALA15_01321)	fghA	1429558..1430409 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
PALA15_RS06650 (PALA15_01322)	ispF	1430480..1430953 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA15_RS06655 (PALA15_01323)	truD	1430950..1432017 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA15_RS06660 (PALA15_01324)	surE	1432005..1432754 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA15_RS06665 (PALA15_01325)	-	1432787..1433422 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA15_RS06670 (PALA15_01326)	-	1433468..1434361 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA15_RS06675 (PALA15_01327)	rpoS	1434466..1435470 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA15_RS06680 (PALA15_01328)	fdxA	1435897..1436220 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA15_RS06685 (PALA15_01329)	mutS	1436287..1438854 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA15_RS06690 (PALA15_01330)	-	1438980..1439987 (-)	1008	WP_023085983.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=636014 PALA15_RS06675 WP_003113871.1 1434466..1435470(+) (rpoS) [Pseudomonas aeruginosa strain PALA15]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=636014 PALA15_RS06675 WP_003113871.1 1434466..1435470(+) (rpoS) [Pseudomonas aeruginosa strain PALA15]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGTGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653