Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSG45_RS24215 Genome accession   NZ_CP089238
Coordinates   5222374..5222931 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5217374..5227931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS24195 (LSG45_24195) pilR 5218650..5219987 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LSG45_RS24200 (LSG45_24200) thiO 5220033..5221127 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  LSG45_RS24205 (LSG45_24205) - 5221262..5221771 (+) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  LSG45_RS24210 (LSG45_24210) - 5221877..5222383 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  LSG45_RS24215 (LSG45_24215) pilV 5222374..5222931 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  LSG45_RS24220 (LSG45_24220) pilW 5222928..5223752 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LSG45_RS24225 (LSG45_24225) pilX 5223749..5224336 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  LSG45_RS24230 (LSG45_24230) pilY1 5224348..5227839 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=636007 LSG45_RS24215 WP_003094697.1 5222374..5222931(+) (pilV) [Pseudomonas aeruginosa strain JNQH-PA033]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=636007 LSG45_RS24215 WP_003094697.1 5222374..5222931(+) (pilV) [Pseudomonas aeruginosa strain JNQH-PA033]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978