Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LSG45_RS10265 Genome accession   NZ_CP089238
Coordinates   2196130..2196765 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2191130..2201765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS10250 (LSG45_10250) - 2191848..2193092 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  LSG45_RS10255 (LSG45_10255) - 2193168..2193701 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  LSG45_RS10260 (LSG45_10260) comA 2193832..2196057 (+) 2226 WP_234575587.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LSG45_RS10265 (LSG45_10265) exbB 2196130..2196765 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LSG45_RS10270 (LSG45_10270) - 2196762..2197202 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  LSG45_RS10275 (LSG45_10275) lpxK 2197202..2198200 (+) 999 WP_234575588.1 tetraacyldisaccharide 4'-kinase -
  LSG45_RS10280 (LSG45_10280) - 2198238..2198423 (+) 186 WP_003091157.1 Trm112 family protein -
  LSG45_RS10285 (LSG45_10285) kdsB 2198423..2199187 (+) 765 WP_031639016.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LSG45_RS10290 (LSG45_10290) - 2199187..2199651 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  LSG45_RS10295 (LSG45_10295) murB 2199648..2200673 (+) 1026 WP_023434479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=635993 LSG45_RS10265 WP_003091163.1 2196130..2196765(+) (exbB) [Pseudomonas aeruginosa strain JNQH-PA033]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=635993 LSG45_RS10265 WP_003091163.1 2196130..2196765(+) (exbB) [Pseudomonas aeruginosa strain JNQH-PA033]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGTATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81