Detailed information NTG0635983

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA14_RS28250
• Genome accession: NZ_CP106742
• Coordinates: 5935624..5936628 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5930624..5941628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA14_RS28235 (PALA14_05566)	-	5931107..5932114 (+)	1008	WP_003098486.1	TolB family protein	-
PALA14_RS28240 (PALA14_05567)	mutS	5932240..5934807 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA14_RS28245 (PALA14_05568)	fdxA	5934874..5935197 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PALA14_RS28250 (PALA14_05569)	rpoS	5935624..5936628 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA14_RS28255 (PALA14_05570)	-	5936733..5937626 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA14_RS28260 (PALA14_05571)	-	5937672..5938307 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA14_RS28265 (PALA14_05572)	surE	5938340..5939089 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA14_RS28270 (PALA14_05573)	truD	5939077..5940144 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PALA14_RS28275 (PALA14_05574)	ispF	5940141..5940614 (-)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA14_RS28280 (PALA14_05575)	fghA	5940685..5941536 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=635983 PALA14_RS28250 WP_003113871.1 5935624..5936628(-) (rpoS) [Pseudomonas aeruginosa strain PALA14]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=635983 PALA14_RS28250 WP_003113871.1 5935624..5936628(-) (rpoS) [Pseudomonas aeruginosa strain PALA14]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653