Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   YBT1518_RS00100 Genome accession   NC_022873
Coordinates   3264..4391 (+) Length   375 a.a.
NCBI ID   WP_000470755.1    Uniprot ID   A0A160GV33
Organism   Bacillus thuringiensis YBT-1518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS00085 (YBT1518_00005) dnaA 246..1586 (+) 1341 WP_000428028.1 chromosomal replication initiator protein DnaA -
  YBT1518_RS00090 (YBT1518_00010) dnaN 1766..2911 (+) 1146 WP_001212886.1 DNA polymerase III subunit beta -
  YBT1518_RS00095 (YBT1518_00015) yaaA 3039..3251 (+) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  YBT1518_RS00100 (YBT1518_00020) recF 3264..4391 (+) 1128 WP_000470755.1 DNA replication/repair protein RecF Machinery gene
  YBT1518_RS00105 (YBT1518_00025) gyrB 4431..6353 (+) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  YBT1518_RS00110 (YBT1518_00030) gyrA 6442..8913 (+) 2472 WP_001282866.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43304.63 Da        Isoelectric Point: 6.7809

>NTDB_id=63598 YBT1518_RS00100 WP_000470755.1 3264..4391(+) (recF) [Bacillus thuringiensis YBT-1518]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=63598 YBT1518_RS00100 WP_000470755.1 3264..4391(+) (recF) [Bacillus thuringiensis YBT-1518]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGTAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGTAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCAAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTACTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160GV33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment