Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSG40_RS27140 Genome accession   NZ_CP089236
Coordinates   5589495..5590052 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5584495..5595052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG40_RS27120 (LSG40_27120) pilR 5585771..5587108 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LSG40_RS27125 (LSG40_27125) thiO 5587154..5588248 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  LSG40_RS27130 (LSG40_27130) - 5588383..5588892 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  LSG40_RS27135 (LSG40_27135) - 5588998..5589504 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LSG40_RS27140 (LSG40_27140) pilV 5589495..5590052 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LSG40_RS27145 (LSG40_27145) pilW 5590049..5590873 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LSG40_RS27150 (LSG40_27150) pilX 5590870..5591457 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LSG40_RS27155 (LSG40_27155) pilY1 5591469..5594960 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=635974 LSG40_RS27140 WP_003119423.1 5589495..5590052(+) (pilV) [Pseudomonas aeruginosa strain JNQH-PA027]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=635974 LSG40_RS27140 WP_003119423.1 5589495..5590052(+) (pilV) [Pseudomonas aeruginosa strain JNQH-PA027]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995