Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F6Y16_RS06480 Genome accession   NZ_AP020318
Coordinates   1272442..1273413 (-) Length   323 a.a.
NCBI ID   WP_000876321.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KUH180038     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267442..1278413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y16_RS06455 (KUH180038_1200) murB 1268022..1268945 (+) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -
  F6Y16_RS06460 (KUH180038_1201) - 1268963..1269277 (+) 315 WP_001127269.1 CHY zinc finger protein -
  F6Y16_RS06465 (KUH180038_1202) - 1269594..1270622 (-) 1029 WP_000754443.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  F6Y16_RS06470 (KUH180038_1203) - 1270741..1271502 (-) 762 WP_000616842.1 ABC transporter ATP-binding protein -
  F6Y16_RS06475 (KUH180038_1204) - 1271499..1272455 (-) 957 WP_001245579.1 iron chelate uptake ABC transporter family permease subunit -
  F6Y16_RS06480 (KUH180038_1205) ceuB 1272442..1273413 (-) 972 WP_000876321.1 ABC transporter permease Machinery gene
  F6Y16_RS06485 - 1273452..1273607 (-) 156 WP_000499195.1 hypothetical protein -
  F6Y16_RS06490 (KUH180038_1206) nrdF 1274009..1274980 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  F6Y16_RS06495 (KUH180038_1207) nrdE 1275098..1277203 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  F6Y16_RS06500 (KUH180038_1208) nrdI 1277166..1277564 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35524.09 Da        Isoelectric Point: 10.2167

>NTDB_id=63595 F6Y16_RS06480 WP_000876321.1 1272442..1273413(-) (ceuB) [Staphylococcus aureus strain KUH180038]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKGLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=63595 F6Y16_RS06480 WP_000876321.1 1272442..1273413(-) (ceuB) [Staphylococcus aureus strain KUH180038]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGGTTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.188

99.071

0.467

Multiple sequence alignment