Detailed information NTG0635856

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA13_RS23590
• Genome accession: NZ_CP106682
• Coordinates: 5006321..5007325 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5001321..5012325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA13_RS23575 (PALA13_04676)	-	5001804..5002811 (+)	1008	WP_012613731.1	TolB family protein	-
PALA13_RS23580 (PALA13_04677)	mutS	5002937..5005504 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PALA13_RS23585 (PALA13_04678)	fdxA	5005571..5005894 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PALA13_RS23590 (PALA13_04679)	rpoS	5006321..5007325 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA13_RS23595 (PALA13_04680)	-	5007430..5008323 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA13_RS23600 (PALA13_04681)	-	5008369..5009004 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA13_RS23605 (PALA13_04682)	surE	5009037..5009786 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA13_RS23610 (PALA13_04683)	truD	5009774..5010841 (-)	1068	WP_023087103.1	tRNA pseudouridine(13) synthase TruD	-
PALA13_RS23615	ispF	5010838..5011311 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA13_RS23620 (PALA13_04685)	fghA	5011382..5012233 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=635856 PALA13_RS23590 WP_003113871.1 5006321..5007325(-) (rpoS) [Pseudomonas aeruginosa strain PALA13]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=635856 PALA13_RS23590 WP_003113871.1 5006321..5007325(-) (rpoS) [Pseudomonas aeruginosa strain PALA13]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653