Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA13_RS04350 Genome accession   NZ_CP106682
Coordinates   940587..941144 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   G3XD84
Organism   Pseudomonas aeruginosa strain PALA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935587..946144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA13_RS04335 (PALA13_00861) pilY1 935679..939170 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PALA13_RS04340 (PALA13_00862) pilX 939182..939769 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA13_RS04345 (PALA13_00863) pilW 939766..940590 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA13_RS04350 (PALA13_00864) pilV 940587..941144 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA13_RS04355 (PALA13_00865) - 941135..941641 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA13_RS04360 (PALA13_00866) - 941747..942256 (-) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PALA13_RS04365 (PALA13_00867) thiO 942391..943485 (+) 1095 WP_023087807.1 glycine oxidase ThiO -
  PALA13_RS04370 (PALA13_00868) pilR 943531..944868 (-) 1338 WP_003094694.1 two-component system response regulator PilR -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=635796 PALA13_RS04350 WP_003119423.1 940587..941144(-) (pilV) [Pseudomonas aeruginosa strain PALA13]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=635796 PALA13_RS04350 WP_003119423.1 940587..941144(-) (pilV) [Pseudomonas aeruginosa strain PALA13]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995