Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA13_RS02050 Genome accession   NZ_CP106682
Coordinates   462835..464181 (+) Length   448 a.a.
NCBI ID   WP_003160919.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457835..469181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA13_RS02030 (PALA13_00406) - 458672..459238 (-) 567 WP_003117889.1 hypothetical protein -
  PALA13_RS02035 (PALA13_00407) rsmD 459241..459837 (-) 597 WP_003142626.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA13_RS02040 (PALA13_00408) - 459837..461324 (-) 1488 WP_003142627.1 M16 family metallopeptidase -
  PALA13_RS02045 (PALA13_00409) - 461317..462714 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PALA13_RS02050 (PALA13_00410) pilA 462835..464181 (+) 1347 WP_003160919.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA13_RS02055 (PALA13_00411) ftsE 464178..464849 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA13_RS02060 (PALA13_00412) ftsX 464849..465856 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA13_RS02065 (PALA13_00413) rpoH 465970..466824 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PALA13_RS02070 (PALA13_00414) - 466889..467494 (+) 606 WP_003084511.1 hypothetical protein -
  PALA13_RS02075 (PALA13_00415) mtgA 467499..468230 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA13_RS02080 (PALA13_00416) - 468267..468644 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PALA13_RS02085 (PALA13_00417) thiS 468747..468947 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47646.03 Da        Isoelectric Point: 4.6083

>NTDB_id=635784 PALA13_RS02050 WP_003160919.1 462835..464181(+) (pilA) [Pseudomonas aeruginosa strain PALA13]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEG
MASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAR
EPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA
KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGT
AKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=635784 PALA13_RS02050 WP_003160919.1 462835..464181(+) (pilA) [Pseudomonas aeruginosa strain PALA13]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCA
GCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGC
ATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGA
CGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCG
CGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGC
GAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCA
ACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCG
AGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCC
AAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAA
GAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGC
AGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACC
GCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGA
CGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-223)

SRP54-type protein, GTPase domain (SRP54)

(243-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.907

95.982

0.46