Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PALA12_RS25710 Genome accession   NZ_CP106681
Coordinates   5558895..5559983 (-) Length   362 a.a.
NCBI ID   WP_003118479.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5553895..5564983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA12_RS25685 (PALA12_05086) - 5554223..5555209 (-) 987 WP_003111200.1 phospholipase C -
  PALA12_RS25690 (PALA12_05087) aroE 5555320..5556144 (-) 825 WP_023083578.1 shikimate dehydrogenase -
  PALA12_RS25695 (PALA12_05088) hemF 5556202..5557119 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PALA12_RS25700 (PALA12_05089) - 5557310..5558287 (+) 978 WP_023083579.1 NADPH:quinone reductase -
  PALA12_RS25705 (PALA12_05090) - 5558297..5558854 (-) 558 WP_016561457.1 L-threonylcarbamoyladenylate synthase -
  PALA12_RS25710 (PALA12_05091) dprA 5558895..5559983 (-) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  PALA12_RS25715 (PALA12_05092) tsaP 5560118..5561143 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PALA12_RS25720 (PALA12_05093) def 5561282..5561788 (+) 507 WP_003107059.1 peptide deformylase -
  PALA12_RS25725 (PALA12_05094) fmt 5561843..5562787 (+) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  PALA12_RS25730 (PALA12_05095) rsmB 5562784..5564088 (+) 1305 WP_003122291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37703.20 Da        Isoelectric Point: 7.0742

>NTDB_id=635752 PALA12_RS25710 WP_003118479.1 5558895..5559983(-) (dprA) [Pseudomonas aeruginosa strain PALA12]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=635752 PALA12_RS25710 WP_003118479.1 5558895..5559983(-) (dprA) [Pseudomonas aeruginosa strain PALA12]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCCCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAAGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.673

99.724

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367