Detailed information NTG0635752

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LTQ02_RS11160
• Genome accession: NZ_CP089205
• Coordinates: 2500600..2501580 (-)
• Length: 326 a.a.
• NCBI ID: WP_004735404.1
• Uniprot ID: A0A7W4C9S7
• Organism: Vibrio splendidus strain 4_C08b
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2495600..2506580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ02_RS11145 (LTQ02_11145)	recA	2496080..2497121 (-)	1042	Protein_2175	recombinase RecA	-
LTQ02_RS11150 (LTQ02_11150)	pncC	2497261..2497755 (-)	495	WP_243578779.1	nicotinamide-nucleotide amidase	-
LTQ02_RS11155 (LTQ02_11155)	mutS	2497880..2500442 (+)	2563	Protein_2177	DNA mismatch repair protein MutS	-
LTQ02_RS11160 (LTQ02_11160)	rpoS	2500600..2501580 (-)	981	WP_004735404.1	RNA polymerase sigma factor RpoS	Regulator
LTQ02_RS11165 (LTQ02_11165)	nlpD	2501679..2502594 (-)	916	Protein_2179	murein hydrolase activator NlpD	-
LTQ02_RS11170 (LTQ02_11170)	-	2502629..2503255 (-)	627	WP_004735402.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LTQ02_RS11175 (LTQ02_11175)	surE	2503256..2503999 (-)	744	WP_243578777.1	5'/3'-nucleotidase SurE	-
LTQ02_RS11180 (LTQ02_11180)	truD	2504076..2505122 (-)	1047	WP_243578776.1	tRNA pseudouridine(13) synthase TruD	-
LTQ02_RS11185 (LTQ02_11185)	ispF	2505145..2505624 (-)	480	WP_004735397.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LTQ02_RS11190 (LTQ02_11190)	ispD	2505627..2506328 (-)	702	WP_017108693.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37244.51 Da
• Isoelectric Point: 5.4366

>NTDB_id=635752 LTQ02_RS11160 WP_004735404.1 2500600..2501580(-) (rpoS) [Vibrio splendidus strain 4_C08b]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=635752 LTQ02_RS11160 WP_004735404.1 2500600..2501580(-) (rpoS) [Vibrio splendidus strain 4_C08b]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAGCTTT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGACGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGTAACCGTGGTCT
TGCACTTCTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAACGTGGTTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTATCTGCGTACCGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCTGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGATGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTGGGTTACGAACCGTCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A7W4C9S7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.416	100	0.847