Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA12_RS25640 Genome accession   NZ_CP106681
Coordinates   5545954..5546577 (+) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain PALA12     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5540954..5551577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA12_RS25615 (PALA12_05072) - 5542039..5542266 (-) 228 WP_003097347.1 DUF1161 domain-containing protein -
  PALA12_RS25620 (PALA12_05073) - 5542450..5542665 (-) 216 WP_003097345.1 dodecin -
  PALA12_RS25625 (PALA12_05074) trpI 5542766..5543653 (-) 888 WP_012613425.1 trpBA operon transcriptional activator TrpI -
  PALA12_RS25630 (PALA12_05075) trpB 5543757..5544965 (+) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  PALA12_RS25635 (PALA12_05076) trpA 5544962..5545768 (+) 807 WP_003097337.1 tryptophan synthase subunit alpha -
  PALA12_RS25640 (PALA12_05077) letA 5545954..5546577 (+) 624 WP_003111192.1 response regulator transcription factor Regulator
  PALA12_RS25645 (PALA12_05078) - 5546585..5546950 (+) 366 WP_003097330.1 Hpt domain-containing protein -
  PALA12_RS25650 (PALA12_05079) - 5546929..5547306 (-) 378 WP_023083577.1 DOPA 4,5-dioxygenase family protein -
  PALA12_RS25655 (PALA12_05080) - 5547317..5548231 (-) 915 WP_003111194.1 choline sulfate utilization transcriptional regulator -
  PALA12_RS25660 (PALA12_05081) betC 5548344..5549855 (+) 1512 WP_003158558.1 choline-sulfatase -
  PALA12_RS25665 (PALA12_05082) - 5549872..5550795 (+) 924 WP_003115797.1 choline ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=635751 PALA12_RS25640 WP_003111192.1 5545954..5546577(+) (letA) [Pseudomonas aeruginosa strain PALA12]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=635751 PALA12_RS25640 WP_003111192.1 5545954..5546577(+) (letA) [Pseudomonas aeruginosa strain PALA12]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAACACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362