Detailed information NTG0635739

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LTQ02_RS04225
• Genome accession: NZ_CP089205
• Coordinates: 937063..938487 (-)
• Length: 474 a.a.
• NCBI ID: WP_017091224.1
• Uniprot ID: A0A7W4C9H0
• Organism: Vibrio splendidus strain 4_C08b
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 932063..943487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ02_RS04200 (LTQ02_04200)	-	932548..933201 (+)	654	WP_243579134.1	thiopurine S-methyltransferase	-
LTQ02_RS04205 (LTQ02_04205)	purT	933396..934572 (-)	1177	Protein_807	formate-dependent phosphoribosylglycinamide formyltransferase	-
LTQ02_RS04210 (LTQ02_04210)	cdd	934740..935628 (-)	889	Protein_808	cytidine deaminase	-
LTQ02_RS04215 (LTQ02_04215)	-	935986..936663 (-)	678	WP_017090893.1	LrgB family protein	-
LTQ02_RS04220 (LTQ02_04220)	-	936666..937037 (-)	372	WP_004734867.1	CidA/LrgA family protein	-
LTQ02_RS04225 (LTQ02_04225)	sbcB	937063..938487 (-)	1425	WP_017091224.1	exodeoxyribonuclease I	Machinery gene
LTQ02_RS04230 (LTQ02_04230)	-	939558..939992 (+)	435	WP_004734871.1	DUF4402 domain-containing protein	-
LTQ02_RS04235 (LTQ02_04235)	-	940045..940482 (+)	438	WP_004734872.1	DUF4402 domain-containing protein	-
LTQ02_RS04240 (LTQ02_04240)	-	940479..941189 (+)	711	WP_017083454.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54626.88 Da
• Isoelectric Point: 4.8684

>NTDB_id=635739 LTQ02_RS04225 WP_017091224.1 937063..938487(-) (sbcB) [Vibrio splendidus strain 4_C08b]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=635739 LTQ02_RS04225 WP_017091224.1 937063..938487(-) (sbcB) [Vibrio splendidus strain 4_C08b]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCCGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGTTGGCAGAACGGCAACTCGCGTTGGG
ATCTGTTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAACCTAAGATGTTCGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTAGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGCGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTATGACGGTTTCTTCTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCTCGTCATTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAAAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A7W4C9H0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766