Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LTQ54_RS11385 Genome accession   NZ_CP089203
Coordinates   2450958..2451476 (+) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio splendidus strain 2_C04b     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445958..2456476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS11375 (LTQ54_11375) gshA 2448704..2450272 (+) 1569 WP_102448381.1 glutamate--cysteine ligase -
  LTQ54_RS11380 (LTQ54_11380) - 2450283..2450933 (+) 651 WP_243578785.1 hypothetical protein -
  LTQ54_RS11385 (LTQ54_11385) luxS 2450958..2451476 (+) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator
  LTQ54_RS11390 (LTQ54_11390) - 2451665..2452936 (-) 1272 WP_054541869.1 CNNM domain-containing protein -
  LTQ54_RS11395 (LTQ54_11395) - 2453064..2453858 (-) 795 WP_243578786.1 inner membrane protein YpjD -
  LTQ54_RS11400 (LTQ54_11400) ffh 2454059..2455453 (+) 1395 WP_004735506.1 signal recognition particle protein -
  LTQ54_RS11405 (LTQ54_11405) rpsP 2455666..2455914 (+) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=635713 LTQ54_RS11385 WP_017079953.1 2450958..2451476(+) (luxS) [Vibrio splendidus strain 2_C04b]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=635713 LTQ54_RS11385 WP_017079953.1 2450958..2451476(+) (luxS) [Vibrio splendidus strain 2_C04b]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTTTACGCAGGATTTATGCGTAATCAATTGAACGGTTCAGATGTAGAGATTATCGATATTTCACCA
ATGGGCTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACGCCTTCAGAGCAGCAAGTAGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAGTACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCTAAAGATATCGCTAATGCGATCATCGCTGCCGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCAGAGTCGATGCTTCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884