Detailed information NTG0635700

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LTQ54_RS09930
• Genome accession: NZ_CP089203
• Coordinates: 2175942..2176946 (-)
• Length: 334 a.a.
• NCBI ID: WP_017083807.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 2_C04b
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2170942..2181946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ54_RS09900 (LTQ54_09900)	zapB	2171096..2171338 (+)	243	WP_004729696.1	cell division protein ZapB	-
LTQ54_RS09905 (LTQ54_09905)	rraA	2171451..2171969 (-)	519	WP_017077596.1	ribonuclease E activity regulator RraA	-
LTQ54_RS09910 (LTQ54_09910)	-	2172043..2172960 (-)	918	WP_017080187.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LTQ54_RS09915 (LTQ54_09915)	hslU	2173116..2174456 (-)	1341	WP_017077598.1	HslU--HslV peptidase ATPase subunit	-
LTQ54_RS09920 (LTQ54_09920)	hslV	2174515..2175063 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
LTQ54_RS09925 (LTQ54_09925)	ftsN	2175286..2175819 (-)	534	WP_004729691.1	cell division protein FtsN	-
LTQ54_RS09930 (LTQ54_09930)	cytR	2175942..2176946 (-)	1005	WP_017083807.1	DNA-binding transcriptional regulator CytR	Regulator
LTQ54_RS09935 (LTQ54_09935)	priA	2177187..2179388 (-)	2202	WP_004729689.1	primosomal protein N'	-
LTQ54_RS09940 (LTQ54_09940)	rpmE	2179721..2179939 (+)	219	WP_004729688.1	50S ribosomal protein L31	-
LTQ54_RS09945 (LTQ54_09945)	-	2180271..2181560 (+)	1290	WP_243578734.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36587.11 Da
• Isoelectric Point: 6.4911

>NTDB_id=635700 LTQ54_RS09930 WP_017083807.1 2175942..2176946(-) (cytR) [Vibrio splendidus strain 2_C04b]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQETKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=635700 LTQ54_RS09930 WP_017083807.1 2175942..2176946(-) (cytR) [Vibrio splendidus strain 2_C04b]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAACGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGTCAACAAAAGAAGCGTGAATCTTCATT
TGTTAACTTGGTCTTCACAAAGCAAGCAGACGGTATGCTACTGCTTGGCACTGACCATCCGTTTGATGTCAGTAAGCCTG
AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC
CTAACCTCTGCATTTGAAGCCGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAGATCTCTGGGCCAACGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTAGCACTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAACGAAGAAGCTAGGTTTACGCGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGCTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.688	99.701	0.874