Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LTQ54_RS01885 Genome accession   NZ_CP089203
Coordinates   376962..378143 (+) Length   393 a.a.
NCBI ID   WP_243579143.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 371962..383143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS01860 (LTQ54_01860) - 371987..372429 (+) 443 Protein_369 transcriptional repressor -
  LTQ54_RS01865 (LTQ54_01865) - 372492..373052 (+) 561 WP_102547856.1 carbonate dehydratase -
  LTQ54_RS01870 (LTQ54_01870) - 373042..374052 (+) 1011 WP_243579141.1 GTP-binding protein -
  LTQ54_RS01875 (LTQ54_01875) - 374241..375138 (-) 898 Protein_372 EamA family transporter -
  LTQ54_RS01880 (LTQ54_01880) - 375242..376624 (+) 1383 WP_243579142.1 PLP-dependent aminotransferase family protein -
  LTQ54_RS01885 (LTQ54_01885) cqsA 376962..378143 (+) 1182 WP_243579143.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LTQ54_RS01890 (LTQ54_01890) cqsS 378346..380394 (-) 2049 WP_004734844.1 hybrid sensor histidine kinase/response regulator Regulator
  LTQ54_RS01895 (LTQ54_01895) - 380650..381465 (-) 816 WP_243579144.1 TauD/TfdA family dioxygenase -
  LTQ54_RS01900 (LTQ54_01900) - 381774..382676 (-) 903 WP_017065498.1 Vmh family MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43720.78 Da        Isoelectric Point: 6.2266

>NTDB_id=635684 LTQ54_RS01885 WP_243579143.1 376962..378143(+) (cqsA) [Vibrio splendidus strain 2_C04b]
MSDKTKTKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPPRNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDEQSKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPDTPVYIDFFAHMSLWEGIRAAGALAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFKSAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=635684 LTQ54_RS01885 WP_243579143.1 376962..378143(+) (cqsA) [Vibrio splendidus strain 2_C04b]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAGCATTTGGTTTTGGGTAAACGTCCACCACGCAACGCTGTTGTCATGCAGAGCAATGATTACC
TAGCACTGTCACATAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCT
GCAATTTTCTTACAAGATGAGCAGTCTAAACCTGCGTTCGAAACTGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGTTGGGCAGCTAATATTGGGCTATTGCAAACCATCTGCCCACCGGACACACCTGTGTACATTGACT
TCTTTGCACACATGTCGTTATGGGAAGGCATTCGCGCTGCAGGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGACTCGGTTTACAGCACAATCGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAATTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGGGAAAATGGAGCTGGCTTAGTTCACGCATTGGGTCTCACTAATCAAGTCGACTTCATTACCGTCAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCTATTCTTGGGCCGAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGTGCAGAAGACAAAC
GAGAAGCCTTATTCAAAAGCGCTAAATCGCTTACTACTGGCCTCAAACGGATTGGCTTTAACATCCGCAGCGAGTCTCAA
ATCGTGGCACTAGAGTGTGGTAGTGAAAGAAACACCGAACGTGTTCGTGATTTCCTCGAAGAACGAGATGTATTCGGTGC
GGTTTTCTGCCGCCCCGCGACGGGCAAGAACAAAAACATCATCCGCTTTTCGGTCAATGCCGACATGACACCAAGAGATA
TTGACCATGTGCTCACCGTTTGTCATGAAGCGTACAATCATCCGGAATTAGAGTTCGTGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55