Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LTQ54_RS01785 Genome accession   NZ_CP089203
Coordinates   358155..359579 (+) Length   474 a.a.
NCBI ID   WP_017091224.1    Uniprot ID   A0A7W4C9H0
Organism   Vibrio splendidus strain 2_C04b     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 353155..364579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS01770 (LTQ54_01770) - 355499..356209 (-) 711 WP_017083454.1 molecular chaperone -
  LTQ54_RS01775 (LTQ54_01775) - 356206..356643 (-) 438 WP_004734872.1 DUF4402 domain-containing protein -
  LTQ54_RS01780 (LTQ54_01780) - 356696..357130 (-) 435 WP_004734871.1 DUF4402 domain-containing protein -
  LTQ54_RS01785 (LTQ54_01785) sbcB 358155..359579 (+) 1425 WP_017091224.1 exodeoxyribonuclease I Machinery gene
  LTQ54_RS01790 (LTQ54_01790) - 359605..359976 (+) 372 WP_004734867.1 CidA/LrgA family protein -
  LTQ54_RS01795 (LTQ54_01795) - 359979..360656 (+) 678 WP_017090893.1 LrgB family protein -
  LTQ54_RS01800 (LTQ54_01800) cdd 361014..361901 (+) 888 WP_004734864.1 cytidine deaminase -
  LTQ54_RS01805 (LTQ54_01805) purT 362069..363244 (+) 1176 WP_182795385.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  LTQ54_RS01810 (LTQ54_01810) - 363374..364027 (-) 654 WP_243579134.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54626.88 Da        Isoelectric Point: 4.8684

>NTDB_id=635683 LTQ54_RS01785 WP_017091224.1 358155..359579(+) (sbcB) [Vibrio splendidus strain 2_C04b]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=635683 LTQ54_RS01785 WP_017091224.1 358155..359579(+) (sbcB) [Vibrio splendidus strain 2_C04b]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCCGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGTTGGCAGAACGGCAACTCGCGTTGGG
ATCTGTTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAACCTAAGATGTTCGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTAGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGCGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTATGACGGTTTCTTCTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCTCGTCATTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAAAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4C9H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.744

99.789

0.766