Detailed information NTG0635672

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LTQ03_RS09865
• Genome accession: NZ_CP089201
• Coordinates: 2143230..2146619 (-)
• Length: 1129 a.a.
• NCBI ID: WP_243583241.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 1_C04a
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2138230..2151619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ03_RS09850 (LTQ03_09850)	-	2138653..2139678 (-)	1026	WP_065102991.1	ABC transporter permease	-
LTQ03_RS09855 (LTQ03_09855)	-	2139681..2140667 (-)	987	WP_004734532.1	ABC transporter permease	-
LTQ03_RS09860 (LTQ03_09860)	-	2140837..2142519 (-)	1683	WP_004734533.1	ABC transporter substrate-binding protein	-
LTQ03_RS09865 (LTQ03_09865)	chiS	2143230..2146619 (-)	3390	WP_243583241.1	response regulator	Regulator
LTQ03_RS09870 (LTQ03_09870)	rsmC	2146836..2147858 (-)	1023	WP_243583242.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LTQ03_RS09875 (LTQ03_09875)	-	2147969..2149054 (-)	1086	WP_004734536.1	AI-2E family transporter	-
LTQ03_RS09880 (LTQ03_09880)	hemL	2149398..2150693 (-)	1296	WP_017084255.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LTQ03_RS09885 (LTQ03_09885)	erpA	2150990..2151331 (+)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127237.93 Da
• Isoelectric Point: 5.4266

>NTDB_id=635672 LTQ03_RS09865 WP_243583241.1 2143230..2146619(-) (chiS) [Vibrio splendidus strain 1_C04a]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNSYQELLKRSDF
DDILLVDINGNVAYSIFKRDDYGTNLLTGKYKDSNLGVTFQRLAKDVKDKRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFNNTQDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNGELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQTGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELDCYSESGSYSHFQAPDLIDNSQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=635672 LTQ03_RS09865 WP_243583241.1 2143230..2146619(-) (chiS) [Vibrio splendidus strain 1_C04a]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTCCAGTCGCACAGTCAGGATCTTCAGGAACAAAGTACTTCGCATCTTGTTT
CGGTCCGTGATACTAAGCAACAGCAAATTGTCGATTACCTACAAGCTCAAGAGTCCCAAGTCATGGGTTTTGTTCGCTCA
GAACTTGCCAATGCCAGTGGCGGGCGATTCTATGGTTTAATCAATGCGTTCCAACGCTTAGGGTTAGATATTGACGAAGC
GCGCAGTAATGCGCAGCAGCGTTACATTCAAGGCTCTGGCGATCAAATCAAGACATCGATTCTTCCAGAATCTAGTAGCT
TTATTGGCAGCGAACGTTATCGACTGCTTCACAAGCGCTACCATAACTCATACCAAGAATTGCTTAAGCGTTCAGACTTT
GATGACATTCTATTAGTCGACATTAACGGTAACGTCGCTTACTCAATCTTTAAGCGTGATGATTACGGCACTAACTTGCT
AACAGGTAAGTACAAAGATTCAAACCTAGGCGTTACCTTTCAACGCTTAGCAAAAGACGTAAAAGACAAACGTAAATCCA
ACGAGGACTATACACCGGTTATCGTTTCTGACTTTAAAGATGAGAACGGTAAGCAGACGGCTTGGTTAGGTGCGCCTATT
GTTCAACAAGGCTACCTGCACAGTTACGCCATGTTTAGGCTGCCAATCAATGGGATTACTAAGCTGATTGCGGATCTCAA
CAAGAGTTCAAATATTCAAACACTGCTTGTGGGTGATGATCACCTGCCACGCAGCCTCGCCCATTCGCAAGAGTCGATTA
ATTTAAGCTTAGACGTTGTCGATAAAGCATTGGCTGGCGAAACGGCCGTAGGTACGTTCAACAACACTCAAGATCAAGCG
ATCATCGCAGCATATACCCCAATTGAGCTGAAATACGCAACATGGGCTCTTGTCGTAGAGCTGCCAGAAAAAGAGGCGTT
TGCCCGTATTCATCAGTTAGAAAAGATCTTCGTGATCGTGATGCTCACAGCGATCATTCTTGTGTTTGTCGCATCGCATT
ATCTGTCCAATTTCATCACTTCCCCTCTCCTCAAACTGACGTGGGCTGCCGAGAAAGTCTCTGCTGGTGATCTTGATGAA
ACCATGATCAATACCGAACGCAAAGATGAAATAGGCCGACTGGCGGTTAGCTTCGAAAGAATGCAGCGATCGATTCGTGA
AAAAATGCAGCTCATCAAGAGCCAAAACGGTGAGCTTGAGGACAACCTTAAGACCATTCAAAAGCAAAATGAAGAGTTGC
AACTGGCGAACAAACTTAAAGATGAATTCTTAGCCACCACCTCACATGAATTGAGAACGCCATTGCATGGCATGGTTGGC
ATCGCTGAAGCGCTAATATCTGGTGCTAACGGCCCTATTCCTGCCAACCAGAAGTACCAATTGGATATCATCATCAATAG
TGGTCAGAGGTTGGCTACACTGGTTGATGACCTGCTTGATTATCACAAGATGCGCTATGGCAGCTTGGATATTAAGAAGT
CTGCTGTTGATTTATCTGCAGCCACCAGCTTAGTGCTTGAGTTATCTCATCACCTGTTAGGTAACAAGCCAATCCGCATC
ATTAACCAAGTGCCAAGCGATTTAGGTCTCGTTTCATCGGATCCTCAACGACTTGAGCAAGTGATGTATAACTTGGTTGG
CAATGCTATCAAGTACACATCAGAAGGTAAGATTGTTATCTCAGCAAGCGTCATCGACGACAACATTCGAGTACAAGTTG
TTGATACCGGCCAAGGTATACCTGCTGAATATCTTGAACACATCTTTGAGCCATTGATTCAAACTGGCCAAGACGCAAGT
AACTATCGCCAAGGTGCCGGCCTTGGGTTATCCATTAGTCGTCAGTTAATCGAGTTGATGGGTGGTTCACTGTATGTAAG
TAGCCAGCCGATGCTTGGCACTACGTTCAGCTTCACATTACCTTTAGCTACCCAAGAAGAACTGGATTGCTACAGTGAGT
CAGGGAGCTACTCACACTTCCAAGCGCCGGATTTAATCGATAACAGCCAGCAAGAAAACAGCGTTATCAGTGAAAACCCA
GATGGCCCGTTGTTGGTAATTGCTGATGATGAGCCGGTAAACCTACGCGTGCTAGACAGCTTCTTGAAATTGGAAGGTTA
TCGAGTACGTACCGCATGTGACGGCCCTGAAACCATCGAGTTGATTGAAAAAGAGAAACCAGAATTACTTCTGCTCGACA
TCATGATGCCAGGTATGAGCGGCTATCAGGTTTGTGAAGCACTACGTAAGCAATACGACCATGCACAATTGCCAATCATT
ATGCTCACTGCACTCAACCAAGCAGAAGACCGGGTTCGAGGCTTTGAAGCTGGTGCCAACGATTACTTGTCTAAACCGTT
CAACAAACAAGAACTGGCGGCGCGAATTACGGCTCACTTATCAGCAAGCAAAGCTGAGCAAAGGCGTCTTGAGAATGACC
AATTGCAACTAGAGCTTAAACACAGAGCTATGGTTGAAGCTAACCTACTAGAAACTCAAGGCCGCTTGTTGGAGCAGTTG
GAGTCAGCCCCTGAAGCCATCATTTGTATTCGTGATGACCAACGTATTCGCTTTGCCAACGAAGCGGCTGCTAAGCTGTT
TAGACGTGGGCAAGAACAACTCAAGCGCTCAATGGCCGACGAGATCATCGCGCCTAAATACCTGAAGGTGGAACAAGCTC
ACTACTGTGGTGATATTGATATCTATATAGACGACACACGTCAGCGCATTCCAAGTGACATCCTTAAGCTACCTGAAGGC
TCAGGGCTCGACACCATGTATATCTTCAATGTCGGTGGTGGCGTTAACTCAAACCGAGTCAATAACCTTGAAACAGCGGT
TGAGGCACTTTCAAGCTACGCCTTTGAAGGTGACAAAGATAAGCTTCAACAACTGAAAGAGCTTGGCGGTGAATTTACTC
GCCTTGCTGATAAGGCAACCGGTGAGGGTAAAAACAAGCAAGAGCTGATGCGTGAAGTACTAGTCGATGTCATGACCAAT
GCCATTATCTACTGGGAGTCTGTTACTGGGGAGACCAAGTTTGCTTTCGCAGAAAAGAGTGGCTTATGGCGAGTCTACTT
AGACCGCAGTACCCTACAAACTAGAACGCTAGACAAATACCTACGAGTAGAAACTCTACCGAAAACACCTCGCTGGCGAA
CGGTACTGAGCTCTATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAAAGAACTCATATCGAGATGCTAAGG
GATAAACTACAGAAACTACTGACCAGCTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (726-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

• PAS domain (PAS_8) (880-914)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.262	100	0.763