Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LTQ03_RS09595 Genome accession   NZ_CP089201
Coordinates   2075724..2076242 (+) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio splendidus strain 1_C04a     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2070724..2081242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS09585 (LTQ03_09585) gshA 2073470..2075038 (+) 1569 WP_102448381.1 glutamate--cysteine ligase -
  LTQ03_RS09590 (LTQ03_09590) - 2075049..2075699 (+) 651 WP_029222727.1 hypothetical protein -
  LTQ03_RS09595 (LTQ03_09595) luxS 2075724..2076242 (+) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator
  LTQ03_RS09600 (LTQ03_09600) - 2076330..2077601 (-) 1272 WP_243583224.1 CNNM domain-containing protein -
  LTQ03_RS09605 (LTQ03_09605) - 2077729..2078523 (-) 795 WP_017079954.1 inner membrane protein YpjD -
  LTQ03_RS09610 (LTQ03_09610) ffh 2078724..2080118 (+) 1395 WP_004735506.1 signal recognition particle protein -
  LTQ03_RS09615 (LTQ03_09615) rpsP 2080331..2080579 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  LTQ03_RS09620 (LTQ03_09620) rimM 2080604..2081158 (+) 555 WP_004735510.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=635666 LTQ03_RS09595 WP_017079953.1 2075724..2076242(+) (luxS) [Vibrio splendidus strain 1_C04a]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=635666 LTQ03_RS09595 WP_017079953.1 2075724..2076242(+) (luxS) [Vibrio splendidus strain 1_C04a]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACGGTATTTGACCTGCGTTTTACGGCACCAAACAAAGATATCCTATCTGAAAAAGGTATCC
ATACTCTAGAGCACCTATACGCAGGATTTATGCGTAATCAACTGAATGGTTCAGACGTGGAAATCATCGATATTTCACCG
ATGGGCTGTCGTACTGGTTTTTACATGAGCCTAATTGGTACGCCTTCAGAGCAGCAAGTGGCAGACGGTTGGTTAGCGGC
TATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGATATCGCCAACGCGATCATCGCTGCAGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCAGAGTCGATGCTTCAAGAGCTTAAAATAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884