Detailed information NTG0635663

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LTQ03_RS09470
• Genome accession: NZ_CP089201
• Coordinates: 2053214..2054194 (+)
• Length: 326 a.a.
• NCBI ID: WP_004735404.1
• Uniprot ID: A0A7W4C9S7
• Organism: Vibrio splendidus strain 1_C04a
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2048214..2059194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ03_RS09440 (LTQ03_09440)	ispD	2048449..2049150 (+)	702	WP_017091774.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LTQ03_RS09445 (LTQ03_09445)	ispF	2049153..2049632 (+)	480	WP_004735397.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LTQ03_RS09450 (LTQ03_09450)	truD	2049655..2050701 (+)	1047	WP_029223235.1	tRNA pseudouridine(13) synthase TruD	-
LTQ03_RS09455 (LTQ03_09455)	surE	2050778..2051521 (+)	744	WP_102535269.1	5'/3'-nucleotidase SurE	-
LTQ03_RS09460 (LTQ03_09460)	-	2051522..2052148 (+)	627	WP_004735402.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LTQ03_RS09465 (LTQ03_09465)	nlpD	2052183..2053115 (+)	933	WP_102500934.1	murein hydrolase activator NlpD	-
LTQ03_RS09470 (LTQ03_09470)	rpoS	2053214..2054194 (+)	981	WP_004735404.1	RNA polymerase sigma factor RpoS	Regulator
LTQ03_RS09475 (LTQ03_09475)	mutS	2054339..2056900 (-)	2562	WP_017077808.1	DNA mismatch repair protein MutS	-
LTQ03_RS09480 (LTQ03_09480)	pncC	2057025..2057519 (+)	495	WP_029222254.1	nicotinamide-nucleotide amidase	-
LTQ03_RS09485 (LTQ03_09485)	recA	2057659..2058699 (+)	1041	WP_004735435.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37244.51 Da
• Isoelectric Point: 5.4366

>NTDB_id=635663 LTQ03_RS09470 WP_004735404.1 2053214..2054194(+) (rpoS) [Vibrio splendidus strain 1_C04a]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=635663 LTQ03_RS09470 WP_004735404.1 2053214..2054194(+) (rpoS) [Vibrio splendidus strain 1_C04a]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAGAGTTTAGATGCTACTCAGCTTT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTATATGCGCGACGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGTAACCGTGGTCT
TGCACTTCTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAACGTGGTTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTAAAAGAGCTGAACATCTATCTGCGTACCGCAAGAGAGCTATCACAAAAACTTGATCATGAACCAAC
GGCGGAAGAAATTGCTTCTAAGCTAGATAAGCCTGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTGGGTTACGAACCGTCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTGACTCGAGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAACGTAGAAAATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A7W4C9S7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.416	100	0.847