Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LTQ03_RS00190 Genome accession   NZ_CP089201
Coordinates   37894..39075 (+) Length   393 a.a.
NCBI ID   WP_243583727.1    Uniprot ID   -
Organism   Vibrio splendidus strain 1_C04a     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 32894..44075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS00170 (LTQ03_00170) - 33393..33953 (+) 561 WP_017089328.1 carbonate dehydratase -
  LTQ03_RS00175 (LTQ03_00175) - 33943..34953 (+) 1011 WP_243583725.1 GTP-binding protein -
  LTQ03_RS00180 (LTQ03_00180) - 35174..36070 (-) 897 WP_102441743.1 EamA family transporter -
  LTQ03_RS00185 (LTQ03_00185) - 36174..37556 (+) 1383 WP_243583726.1 PLP-dependent aminotransferase family protein -
  LTQ03_RS00190 (LTQ03_00190) cqsA 37894..39075 (+) 1182 WP_243583727.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LTQ03_RS00195 (LTQ03_00195) - 39253..41301 (-) 2049 WP_243583728.1 hybrid sensor histidine kinase/response regulator -
  LTQ03_RS00200 (LTQ03_00200) - 41557..42372 (-) 816 WP_102504136.1 TauD/TfdA family dioxygenase -
  LTQ03_RS00205 (LTQ03_00205) - 42621..43196 (-) 576 WP_151408319.1 ricin-type beta-trefoil lectin domain protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.79 Da        Isoelectric Point: 6.2270

>NTDB_id=635638 LTQ03_RS00190 WP_243583727.1 37894..39075(+) (cqsA) [Vibrio splendidus strain 1_C04a]
MSDKTKTKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPPRNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDEESKPAFETELASYVGMESCLLSQSGWAANIGLLQTICPPSTPVYIDFFAHMSLWEGIRAAGALAHPFMHNNMN
HLRKQLERHGSGVIVVDSIYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFKTAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=635638 LTQ03_RS00190 WP_243583727.1 37894..39075(+) (cqsA) [Vibrio splendidus strain 1_C04a]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAGCATTTGGTTTTGGGTAAACGTCCACCACGCAACGCTGTTGTCATGCAGAGCAATGATTACC
TAGCCCTGTCACACAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCG
GCCATTTTCCTGCAAGACGAAGAGTCTAAACCTGCGTTTGAAACCGAACTCGCAAGCTATGTGGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCTGCTAATATTGGGCTATTGCAAACCATCTGCCCACCAAGCACACCTGTGTACATTGACT
TCTTTGCACACATGTCGCTATGGGAAGGCATTCGCGCTGCAGGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGATTCGATTTACAGCACAATCGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAATTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGGGAAAATGGAGCTGGCTTAGTTCACGCATTGGGTCTCACTAATCAAGTCGACTTCATTACCGTCAGTTTGGCTAAG
ACCTTTGCTTATCGTGCAGGTGCTATCCTTGGGCCAAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGTGCAGAAGACAAAC
GAGAAGCCTTATTCAAAACCGCTAAATCGCTCACTACCGGCCTCAAGCGGATTGGCTTTAATATCCGCAGCGAGTCTCAA
ATTGTAGCACTAGAGTGTGGTAGTGAAAGAAACACCGAACGGGTTCGTGATTTCCTCGAAGAACGAGATGTATTCGGTGC
GGTTTTCTGCCGCCCCGCGACGGGCAAGAACAAAAACATCATCCGCTTTTCGGTCAATGCCGACATGACACCAAGAGATA
TTGACCATGTGCTCACCGTTTGTCATGAAGCGTACAATCATCCGGAATTAGAATTCGTGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.072

98.473

0.552