Detailed information NTG0635637

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LTQ03_RS00090
• Genome accession: NZ_CP089201
• Coordinates: 19087..20511 (+)
• Length: 474 a.a.
• NCBI ID: WP_102441754.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 1_C04a
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 14087..25511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ03_RS00075 (LTQ03_00075)	-	16424..17134 (-)	711	WP_017090896.1	molecular chaperone	-
LTQ03_RS00080 (LTQ03_00080)	-	17131..17568 (-)	438	WP_243583715.1	DUF4402 domain-containing protein	-
LTQ03_RS00085 (LTQ03_00085)	-	17621..18055 (-)	435	WP_243583716.1	DUF4402 domain-containing protein	-
LTQ03_RS00090 (LTQ03_00090)	sbcB	19087..20511 (+)	1425	WP_102441754.1	exodeoxyribonuclease I	Machinery gene
LTQ03_RS00095 (LTQ03_00095)	-	20537..20908 (+)	372	WP_182795383.1	CidA/LrgA family protein	-
LTQ03_RS00100 (LTQ03_00100)	-	20911..21588 (+)	678	WP_243583717.1	LrgB family protein	-
LTQ03_RS00105 (LTQ03_00105)	cdd	21946..22833 (+)	888	WP_017086319.1	cytidine deaminase	-
LTQ03_RS00110 (LTQ03_00110)	purT	23001..24176 (+)	1176	WP_243583718.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
LTQ03_RS00115 (LTQ03_00115)	-	24306..24959 (-)	654	WP_102447987.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54612.85 Da
• Isoelectric Point: 4.8658

>NTDB_id=635637 LTQ03_RS00090 WP_102441754.1 19087..20511(+) (sbcB) [Vibrio splendidus strain 1_C04a]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEDGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=635637 LTQ03_RS00090 WP_102441754.1 19087..20511(+) (sbcB) [Vibrio splendidus strain 1_C04a]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCCGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCCGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGTTGGCAGAACGGCAACTCGCGTTGGG
ATCTGTTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGACGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCTGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CAGATAAAACAGCGATGAACATCATCCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGAATTAAACCGTTACTGTTCCGTTACCGTGCTCGTCATTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAGAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.956	99.789	0.768