Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTK18_RS05750 Genome accession   NZ_CP089165
Coordinates   1167464..1167859 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1162464..1172859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK18_RS05720 (LTK18_05720) - 1163722..1164126 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LTK18_RS05725 (LTK18_05725) - 1164464..1164556 (+) 93 WP_001790611.1 hypothetical protein -
  LTK18_RS05730 (LTK18_05730) - 1164688..1164921 (+) 234 WP_000384523.1 DUF1146 family protein -
  LTK18_RS05735 (LTK18_05735) murA 1165032..1166297 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LTK18_RS05740 (LTK18_05740) fabZ 1166331..1166771 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LTK18_RS05745 (LTK18_05745) - 1166830..1167270 (-) 441 WP_000846746.1 YwpF-like family protein -
  LTK18_RS05750 (LTK18_05750) ssb 1167464..1167859 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LTK18_RS05755 (LTK18_05755) sceD 1168248..1168943 (+) 696 WP_000752005.1 lytic transglycosylase SceD -
  LTK18_RS05760 (LTK18_05760) tenA 1169330..1170019 (+) 690 WP_000396077.1 thiaminase II -
  LTK18_RS05765 (LTK18_05765) thiD 1170012..1170842 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LTK18_RS05770 (LTK18_05770) thiM 1170826..1171617 (+) 792 WP_216777705.1 hydroxyethylthiazole kinase -
  LTK18_RS05775 (LTK18_05775) thiE 1171619..1172260 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=635602 LTK18_RS05750 WP_000932694.1 1167464..1167859(+) (ssb) [Staphylococcus aureus strain UNC_SaCF07]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=635602 LTK18_RS05750 WP_000932694.1 1167464..1167859(+) (ssb) [Staphylococcus aureus strain UNC_SaCF07]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992