Detailed information NTG0635595

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA11_RS06845
• Genome accession: NZ_CP106680
• Coordinates: 1462810..1463814 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1457810..1468814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA11_RS06815 (PALA11_01352)	fghA	1457902..1458753 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA11_RS06820 (PALA11_01353)	ispF	1458824..1459297 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA11_RS06825 (PALA11_01354)	truD	1459294..1460361 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PALA11_RS06830 (PALA11_01355)	surE	1460349..1461098 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA11_RS06835 (PALA11_01356)	-	1461131..1461766 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA11_RS06840 (PALA11_01357)	-	1461812..1462705 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA11_RS06845 (PALA11_01358)	rpoS	1462810..1463814 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA11_RS06850 (PALA11_01359)	fdxA	1464241..1464564 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA11_RS06855 (PALA11_01360)	mutS	1464631..1467198 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA11_RS06860 (PALA11_01361)	-	1467324..1468331 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=635595 PALA11_RS06845 WP_003113871.1 1462810..1463814(+) (rpoS) [Pseudomonas aeruginosa strain PALA11]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=635595 PALA11_RS06845 WP_003113871.1 1462810..1463814(+) (rpoS) [Pseudomonas aeruginosa strain PALA11]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653