Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA11_RS01885 Genome accession   NZ_CP106680
Coordinates   411406..412764 (+) Length   452 a.a.
NCBI ID   WP_224015716.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406406..417764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA11_RS01865 (PALA11_00373) - 407243..407809 (-) 567 WP_003117889.1 hypothetical protein -
  PALA11_RS01870 (PALA11_00374) rsmD 407812..408408 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA11_RS01875 (PALA11_00375) - 408408..409895 (-) 1488 WP_003110404.1 M16 family metallopeptidase -
  PALA11_RS01880 (PALA11_00376) - 409888..411285 (-) 1398 WP_113887023.1 M16 family metallopeptidase -
  PALA11_RS01885 (PALA11_00377) pilA 411406..412764 (+) 1359 WP_224015716.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA11_RS01890 (PALA11_00378) ftsE 412761..413432 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA11_RS01895 (PALA11_00379) ftsX 413432..414439 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA11_RS01900 (PALA11_00380) rpoH 414553..415407 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PALA11_RS01905 (PALA11_00381) - 415472..416077 (+) 606 WP_003084511.1 hypothetical protein -
  PALA11_RS01910 (PALA11_00382) mtgA 416082..416813 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA11_RS01915 (PALA11_00383) - 416850..417227 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PALA11_RS01920 (PALA11_00384) thiS 417330..417530 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48099.48 Da        Isoelectric Point: 4.5272

>NTDB_id=635579 PALA11_RS01885 WP_224015716.1 411406..412764(+) (pilA) [Pseudomonas aeruginosa strain PALA11]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEEPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSAS
IGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQV
DVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDA
VQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTK
LDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=635579 PALA11_RS01885 WP_224015716.1 411406..412764(+) (pilA) [Pseudomonas aeruginosa strain PALA11]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAAGAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCG
CGCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGC
ATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCT
GCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGG
CCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTC
GACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTTGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGC
GAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGC
AGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCG
GTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGAT
GGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACG
CCGGCACCGGGCAGAACGCCATCAATCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAA
CTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGG
CGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(162-227)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.235

96.018

0.454