Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   N7985_RS10400 Genome accession   NZ_CP106673
Coordinates   2079193..2080968 (-) Length   591 a.a.
NCBI ID   WP_015714092.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2074193..2085968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS10380 (N7985_10380) desE 2074566..2075624 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  N7985_RS10385 (N7985_10385) desK 2075744..2076856 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  N7985_RS10390 (N7985_10390) desR 2076875..2077474 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  N7985_RS10395 (N7985_10395) walN 2078082..2078945 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  N7985_RS10400 (N7985_10400) recQ 2079193..2080968 (-) 1776 WP_015714092.1 DNA helicase RecQ Machinery gene
  N7985_RS10410 (N7985_10410) azoJ 2081533..2082159 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  N7985_RS10415 (N7985_10415) stpP 2082311..2082802 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  N7985_RS10420 (N7985_10420) - 2082877..2083209 (-) 333 WP_014480020.1 hypothetical protein -
  N7985_RS10425 (N7985_10425) - 2083287..2083514 (+) 228 WP_014480021.1 hypothetical protein -
  N7985_RS10430 (N7985_10430) yocM 2083501..2083977 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  N7985_RS10435 (N7985_10435) - 2084044..2084307 (+) 264 WP_004399338.1 hypothetical protein -
  N7985_RS10440 (N7985_10440) - 2084312..2084545 (+) 234 WP_003231251.1 hypothetical protein -
  N7985_RS10445 (N7985_10445) yozO 2084639..2084983 (-) 345 WP_003220141.1 PH domain-containing protein -
  N7985_RS10450 (N7985_10450) yozC 2085339..2085542 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67386.80 Da        Isoelectric Point: 6.1778

>NTDB_id=635503 N7985_RS10400 WP_015714092.1 2079193..2080968(-) (recQ) [Bacillus subtilis strain SRCM116268]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKESLKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=635503 N7985_RS10400 WP_015714092.1 2079193..2080968(-) (recQ) [Bacillus subtilis strain SRCM116268]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAACTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACATGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACCGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTACTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAATC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-508)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995