Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LTK20_RS08515 Genome accession   NZ_CP089159
Coordinates   1641718..1642287 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636718..1647287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK20_RS08475 (LTK20_08475) - 1637192..1637800 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LTK20_RS08480 (LTK20_08480) rplL 1637975..1638343 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LTK20_RS08485 (LTK20_08485) rplJ 1638386..1638886 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LTK20_RS08490 (LTK20_08490) rplA 1639158..1639850 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LTK20_RS08495 (LTK20_08495) rplK 1640058..1640480 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LTK20_RS08500 (LTK20_08500) nusG 1640661..1641209 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LTK20_RS08505 (LTK20_08505) secE 1641222..1641404 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LTK20_RS08510 (LTK20_08510) rpmG 1641460..1641603 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LTK20_RS08515 (LTK20_08515) sigH 1641718..1642287 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  LTK20_RS08520 (LTK20_08520) - 1642368..1642892 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LTK20_RS08525 (LTK20_08525) rlmB 1642892..1643638 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LTK20_RS08530 (LTK20_08530) - 1643646..1644050 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LTK20_RS08535 (LTK20_08535) cysS 1644043..1645443 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LTK20_RS08540 (LTK20_08540) cysE 1645427..1646074 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=635496 LTK20_RS08515 WP_000872873.1 1641718..1642287(-) (sigH) [Staphylococcus aureus strain UNC_SaCF18]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=635496 LTK20_RS08515 WP_000872873.1 1641718..1642287(-) (sigH) [Staphylococcus aureus strain UNC_SaCF18]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984