Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LTK20_RS03215 Genome accession   NZ_CP089159
Coordinates   568369..568815 (+) Length   148 a.a.
NCBI ID   WP_001791635.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF18     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563369..573815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK20_RS03180 (LTK20_03180) - 563863..564066 (+) 204 WP_000087561.1 YqgQ family protein -
  LTK20_RS03185 (LTK20_03185) - 564063..565049 (+) 987 WP_000161314.1 ROK family glucokinase -
  LTK20_RS03190 (LTK20_03190) - 565049..565378 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LTK20_RS03195 (LTK20_03195) - 565375..565998 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LTK20_RS03200 (LTK20_03200) comGA 566050..567024 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  LTK20_RS03205 (LTK20_03205) comGB 566996..568066 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LTK20_RS03210 (LTK20_03210) comGC 568080..568391 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LTK20_RS03215 (LTK20_03215) comGD 568369..568815 (+) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  LTK20_RS03220 (LTK20_03220) comGE 568802..569101 (+) 300 WP_053860981.1 hypothetical protein Machinery gene
  LTK20_RS03225 (LTK20_03225) comGF 569019..569516 (+) 498 WP_078160958.1 competence type IV pilus minor pilin ComGF Machinery gene
  LTK20_RS03230 (LTK20_03230) - 569613..569759 (+) 147 WP_001789879.1 hypothetical protein -
  LTK20_RS03235 (LTK20_03235) - 569749..570273 (+) 525 WP_001015117.1 shikimate kinase -
  LTK20_RS03240 (LTK20_03240) gcvT 570432..571523 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LTK20_RS03245 (LTK20_03245) gcvPA 571543..572889 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17199.34 Da        Isoelectric Point: 10.2908

>NTDB_id=635483 LTK20_RS03215 WP_001791635.1 568369..568815(+) (comGD) [Staphylococcus aureus strain UNC_SaCF18]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNNIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=635483 LTK20_RS03215 WP_001791635.1 568369..568815(+) (comGD) [Staphylococcus aureus strain UNC_SaCF18]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAATATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986