Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N7985_RS02810 Genome accession   NZ_CP106673
Coordinates   537025..538200 (+) Length   391 a.a.
NCBI ID   WP_129138130.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116268     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 532025..543200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS02790 (N7985_02790) cwlT 533387..534376 (+) 990 WP_087961683.1 bifunctional lytic transglycosylase/C40 family peptidase -
  N7985_RS02795 (N7985_02795) - 534391..534897 (+) 507 WP_129138127.1 hypothetical protein -
  N7985_RS02800 (N7985_02800) - 534960..535337 (+) 378 WP_396127485.1 cystatin-like fold lipoprotein -
  N7985_RS02805 (N7985_02805) - 535568..536776 (-) 1209 WP_129138129.1 hypothetical protein -
  N7985_RS02810 (N7985_02810) rapC 537025..538200 (+) 1176 WP_129138130.1 response regulator aspartate phosphatase RapI Regulator
  N7985_RS02820 (N7985_02820) - 538332..539642 (-) 1311 WP_129138132.1 hypothetical protein -
  N7985_RS02825 (N7985_02825) - 540008..540928 (-) 921 Protein_507 tyrosine-type recombinase/integrase -
  N7985_RS02830 (N7985_02830) - 540887..541180 (+) 294 WP_231573529.1 cystatin-like fold lipoprotein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 46604.03 Da        Isoelectric Point: 4.9642

>NTDB_id=635446 N7985_RS02810 WP_129138130.1 537025..538200(+) (rapC) [Bacillus subtilis strain SRCM116268]
MRSVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMNSKEIED
LHNAYETIKEIEKQGQLTGMLEYYFYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTVRCQFIVAGNLIDSLEYERALEQFLNSLEISKESNIDHLIAMSHMNIGICYDELKEY
KKASQHLILALEIFEKSKHSFLTKTLFTLTYVEAKQQNYDVALTYFRKGRLIADKSDDKEYSAKFKILEGLFFSDGENQL
IKNAFSYLTSRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIINENQPDSIGSSDFR

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=635446 N7985_RS02810 WP_129138130.1 537025..538200(+) (rapC) [Bacillus subtilis strain SRCM116268]
TTGCGGAGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACCTAGTTACAAAAAAGTTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTACTAAACATGGAAGAAAACCAAG
ATGCATTGTTATATTATCAGCTATTGGAATTTAGGCACGAGATAATGCTGAGTTATATGAATTCTAAGGAAATAGAAGAT
CTCCATAATGCTTATGAAACTATAAAAGAAATTGAGAAGCAAGGGCAATTAACCGGCATGTTGGAATACTATTTTTACTT
TTTTAAGGGTATGTACGAGTTTAGACGTAAAGAATTAACTACAGCGATAAGTGCCTATCGAATAGCAGAATCAAAGTTGT
CTGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCCTATGTATATTATTATATGAAACAAACATAC
TTCTCTATGAATTATGCAAATCGTGCACTCAAAATATTTAGAGAGTATGAAGAGTATGCTGTCCAGACTGTGCGTTGTCA
ATTTATTGTAGCAGGAAACTTGATCGATTCTTTAGAATATGAAAGAGCTTTGGAGCAATTTTTGAATTCTTTGGAAATCT
CCAAGGAAAGTAATATAGATCATTTAATTGCAATGTCACACATGAATATTGGAATTTGTTATGATGAATTGAAAGAATAT
AAAAAGGCTTCACAACATTTAATCTTGGCTTTAGAAATTTTTGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT
CACTTTAACCTACGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGACATACTTTAGGAAAGGTCGATTAATTGCCG
ATAAAAGTGATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGAGAATCAATTA
ATAAAGAATGCATTTTCATATCTAACTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GGGAGATTATTAATGAAAATCAGCCGGATTCTATTGGCAGCAGTGATTTTAGGTAG

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-256)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(10-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.701

95.652

0.361