Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   N7980_RS18730 Genome accession   NZ_CP106671
Coordinates   3625799..3626233 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM116301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3620799..3631233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS18715 (N7980_18715) epsK 3621428..3622279 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  N7980_RS18720 (N7980_18720) ephJ 3622260..3623348 (-) 1089 WP_003246551.1 lipoprotein -
  N7980_RS18725 (N7980_18725) topB 3623551..3625734 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  N7980_RS18730 (N7980_18730) lrpC 3625799..3626233 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  N7980_RS18735 (N7980_18735) ydzA 3626418..3626708 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  N7980_RS18740 (N7980_18740) amj 3626752..3627561 (-) 810 WP_003234394.1 lipid II flippase Amj -
  N7980_RS18745 (N7980_18745) ydaG 3628067..3628489 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  N7980_RS18750 (N7980_18750) ydaF 3628567..3629118 (-) 552 WP_041850710.1 GNAT family N-acetyltransferase -
  N7980_RS18755 (N7980_18755) lyxE 3629206..3629709 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  N7980_RS18760 (N7980_18760) ydaD 3629725..3630585 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=635401 N7980_RS18730 WP_003246585.1 3625799..3626233(-) (lrpC) [Bacillus subtilis strain SRCM116301]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=635401 N7980_RS18730 WP_003246585.1 3625799..3626233(-) (lrpC) [Bacillus subtilis strain SRCM116301]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1