Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   N7980_RS16845 Genome accession   NZ_CP106671
Coordinates   3256673..3257389 (-) Length   238 a.a.
NCBI ID   WP_041851175.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251673..3262389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS16840 (N7980_16840) hypO 3255868..3256533 (-) 666 WP_043940068.1 NAD(P)H-dependent oxidoreductase -
  N7980_RS16845 (N7980_16845) treR 3256673..3257389 (-) 717 WP_041851175.1 trehalose operon repressor Regulator
  N7980_RS16850 (N7980_16850) treC 3257410..3259095 (-) 1686 WP_041851176.1 alpha,alpha-phosphotrehalase -
  N7980_RS16855 (N7980_16855) treP 3259166..3260578 (-) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  N7980_RS16860 (N7980_16860) yfkQ 3260767..3262308 (+) 1542 WP_041851177.1 spore germination protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27783.78 Da        Isoelectric Point: 7.5088

>NTDB_id=635396 N7980_RS16845 WP_041851175.1 3256673..3257389(-) (treR) [Bacillus subtilis strain SRCM116301]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLAPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=635396 N7980_RS16845 WP_041851175.1 3256673..3257389(-) (treR) [Bacillus subtilis strain SRCM116301]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGCGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAGTATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTTCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416