Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LRO88_RS15705 Genome accession   NZ_CP089148
Coordinates   2836695..2837441 (-) Length   248 a.a.
NCBI ID   WP_159376980.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2831695..2842441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS15675 - 2832023..2832457 (+) 435 WP_069839654.1 helix-turn-helix domain-containing protein -
  LRO88_RS15680 - 2832471..2832917 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  LRO88_RS15685 - 2832948..2834384 (+) 1437 WP_169057996.1 recombinase family protein -
  LRO88_RS15690 radC 2834397..2834804 (-) 408 Protein_3057 RadC family protein -
  LRO88_RS15695 maf 2834841..2835410 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  LRO88_RS15700 spoIIB 2835563..2836561 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  LRO88_RS15705 comC 2836695..2837441 (-) 747 WP_159376980.1 prepilin peptidase Machinery gene
  LRO88_RS15710 folC 2837583..2838875 (-) 1293 WP_043856952.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  LRO88_RS15715 valS 2838935..2841577 (-) 2643 WP_159377213.1 valine--tRNA ligase -
  LRO88_RS15720 - 2842025..2842216 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26499.08 Da        Isoelectric Point: 9.7433

>NTDB_id=635321 LRO88_RS15705 WP_159376980.1 2836695..2837441(-) (comC) [Bacillus subtilis strain NIB353]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLIYPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=635321 LRO88_RS15705 WP_159376980.1 2836695..2837441(-) (comC) [Bacillus subtilis strain NIB353]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTATCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992