Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LRO88_RS14065 Genome accession   NZ_CP089148
Coordinates   2572096..2572863 (-) Length   255 a.a.
NCBI ID   WP_049141200.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2567096..2577863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS14045 ppsR 2567270..2568082 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  LRO88_RS14050 ccpN 2568108..2568746 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  LRO88_RS14055 glyS 2568879..2570918 (-) 2040 WP_129110529.1 glycine--tRNA ligase subunit beta -
  LRO88_RS14060 glyQ 2570911..2571798 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  LRO88_RS14065 recO 2572096..2572863 (-) 768 WP_049141200.1 DNA repair protein RecO Machinery gene
  LRO88_RS14070 yqzL 2572900..2573043 (-) 144 WP_003230053.1 YqzL family protein -
  LRO88_RS14075 era 2573191..2574096 (-) 906 WP_003230051.1 GTPase Era -
  LRO88_RS14080 - 2574077..2574487 (-) 411 WP_003230049.1 cytidine deaminase -
  LRO88_RS14085 unpK 2574606..2574977 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  LRO88_RS14090 ybeY 2574958..2575431 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  LRO88_RS14095 pgpH 2575432..2577567 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29326.05 Da        Isoelectric Point: 8.3080

>NTDB_id=635313 LRO88_RS14065 WP_049141200.1 2572096..2572863(-) (recO) [Bacillus subtilis strain NIB353]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=635313 LRO88_RS14065 WP_049141200.1 2572096..2572863(-) (recO) [Bacillus subtilis strain NIB353]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992