Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   N7980_RS05955 Genome accession   NZ_CP106671
Coordinates   1165833..1166543 (+) Length   236 a.a.
NCBI ID   WP_041851103.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160833..1171543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS05935 (N7980_05935) ytfP 1161312..1162574 (-) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -
  N7980_RS05940 (N7980_05940) murJ 1162778..1164412 (+) 1635 WP_041851104.1 lipid II flippase MurJ -
  N7980_RS05945 (N7980_05945) rsuA 1164481..1165200 (+) 720 WP_014480587.1 pseudouridine synthase -
  N7980_RS05950 (N7980_05950) ytzE 1165322..1165543 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  N7980_RS05955 (N7980_05955) pptA 1165833..1166543 (+) 711 WP_041851103.1 ABC transporter ATP-binding protein Regulator
  N7980_RS05960 (N7980_05960) ythQ 1166540..1167697 (+) 1158 WP_041851102.1 ABC transporter permease -
  N7980_RS05965 (N7980_05965) pbuO 1167736..1169034 (-) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  N7980_RS05970 (N7980_05970) pepV 1169131..1170522 (+) 1392 WP_029318264.1 dipeptidase PepV -
  N7980_RS05975 (N7980_05975) cysK 1170556..1171491 (-) 936 WP_003229237.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.63 Da        Isoelectric Point: 5.3508

>NTDB_id=635304 N7980_RS05955 WP_041851103.1 1165833..1166543(+) (pptA) [Bacillus subtilis strain SRCM116301]
MTNLLEASIEQAGYTSRNKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=635304 N7980_RS05955 WP_041851103.1 1165833..1166543(+) (pptA) [Bacillus subtilis strain SRCM116301]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAATAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTACCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

44.248

95.763

0.424