Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LRO88_RS13540 Genome accession   NZ_CP089148
Coordinates   2482222..2483025 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2477222..2488025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS13515 glpQB 2478368..2479099 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  LRO88_RS13520 yqiI 2479178..2479798 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  LRO88_RS13525 yqiH 2479813..2480106 (-) 294 WP_003230284.1 lipoprotein -
  LRO88_RS13530 - 2480414..2480566 (+) 153 WP_014480226.1 hypothetical protein -
  LRO88_RS13535 yqiG 2480639..2481757 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  LRO88_RS13540 spo0A 2482222..2483025 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  LRO88_RS13545 spoIVB 2483301..2484581 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  LRO88_RS13550 recN 2484756..2486486 (-) 1731 WP_072173936.1 DNA repair protein RecN Machinery gene
  LRO88_RS13555 argR 2486523..2486972 (-) 450 WP_014114358.1 arginine repressor ArgR -
  LRO88_RS13560 yqxC 2487070..2487915 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=635302 LRO88_RS13540 WP_003226427.1 2482222..2483025(-) (spo0A) [Bacillus subtilis strain NIB353]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=635302 LRO88_RS13540 WP_003226427.1 2482222..2483025(-) (spo0A) [Bacillus subtilis strain NIB353]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCAGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1