Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LRO88_RS12530 Genome accession   NZ_CP089148
Coordinates   2302943..2303563 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2297943..2308563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS12490 ptsA 2299074..2299580 (-) 507 WP_029726788.1 PTS sugar transporter subunit IIA -
  LRO88_RS12495 ypqA 2299718..2300137 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  LRO88_RS12500 sppG 2300158..2300535 (-) 378 WP_015251832.1 YppG family protein -
  LRO88_RS12505 yppF 2300723..2300911 (+) 189 WP_003230690.1 YppF family protein -
  LRO88_RS12510 yppE 2300950..2301321 (-) 372 WP_021481525.1 YppE family protein -
  LRO88_RS12515 yppD 2301367..2301612 (-) 246 WP_021481526.1 DUF5446 family protein -
  LRO88_RS12520 sspM 2301811..2301915 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  LRO88_RS12525 yppC 2301940..2302902 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  LRO88_RS12530 recU 2302943..2303563 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  LRO88_RS12535 ponA 2303585..2306338 (+) 2754 WP_120028310.1 transglycosylase domain-containing protein -
  LRO88_RS12540 ypoC 2306414..2306908 (-) 495 WP_120028311.1 YpoC family protein -
  LRO88_RS12545 nth 2306905..2307564 (-) 660 WP_009967580.1 endonuclease III -
  LRO88_RS12550 dnaD 2307583..2308281 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=635301 LRO88_RS12530 WP_004399067.1 2302943..2303563(+) (recU) [Bacillus subtilis strain NIB353]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=635301 LRO88_RS12530 WP_004399067.1 2302943..2303563(+) (recU) [Bacillus subtilis strain NIB353]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1