Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LRO88_RS08195 Genome accession   NZ_CP089148
Coordinates   1536114..1536698 (+) Length   194 a.a.
NCBI ID   WP_231834249.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531114..1541698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS08170 ykuS 1531689..1531934 (+) 246 WP_003232382.1 YkuS family protein -
  LRO88_RS08175 - 1532063..1533415 (+) 1353 WP_014478984.1 IS1182 family transposase -
  LRO88_RS08180 mscT 1533549..1534352 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  LRO88_RS08185 ahpA 1534589..1535131 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  LRO88_RS08190 ykuV 1535202..1535648 (+) 447 WP_032725606.1 thiol-disulfide oxidoreductase YkuV -
  LRO88_RS08195 rok 1536114..1536698 (+) 585 WP_231834249.1 transcriptional regulator Rok Regulator
  LRO88_RS08200 cse15 1536739..1537704 (-) 966 WP_032725607.1 spore protein Cse15 -
  LRO88_RS08205 mobA 1537841..1538440 (+) 600 WP_021479380.1 molybdenum cofactor guanylyltransferase -
  LRO88_RS08210 moeB 1538491..1539510 (+) 1020 WP_032725608.1 molybdopterin-synthase adenylyltransferase MoeB -
  LRO88_RS08215 glp 1539528..1540820 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  LRO88_RS08220 mobB 1540781..1541302 (+) 522 WP_032725609.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22099.11 Da        Isoelectric Point: 9.6909

>NTDB_id=635294 LRO88_RS08195 WP_231834249.1 1536114..1536698(+) (rok) [Bacillus subtilis strain NIB353]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDKNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESAESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=635294 LRO88_RS08195 WP_231834249.1 1536114..1536698(+) (rok) [Bacillus subtilis strain NIB353]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAAAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAACCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTGAATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

99.471

97.423

0.969