Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LRO88_RS08090 Genome accession   NZ_CP089148
Coordinates   1518662..1519126 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain NIB353     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513662..1524126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS08070 kinA 1514129..1515949 (+) 1821 WP_231834247.1 sporulation histidine kinase KinA -
  LRO88_RS08075 dapX 1515959..1517140 (-) 1182 WP_159376785.1 aminotransferase A -
  LRO88_RS08080 - 1517342..1517503 (-) 162 WP_014476654.1 hypothetical protein -
  LRO88_RS08085 cheV 1517707..1518618 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  LRO88_RS08090 kre 1518662..1519126 (-) 465 WP_003232406.1 YkyB family protein Regulator
  LRO88_RS08095 ykuC 1519252..1520544 (-) 1293 WP_014479656.1 MFS transporter -
  LRO88_RS08100 ltdD 1520620..1521114 (-) 495 WP_231834300.1 L,D-transpeptidase family protein -
  LRO88_RS08105 ppeE 1521171..1522031 (-) 861 WP_041850886.1 metallophosphoesterase -
  LRO88_RS08110 fadH 1522174..1522938 (+) 765 WP_041850885.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=635293 LRO88_RS08090 WP_003232406.1 1518662..1519126(-) (kre) [Bacillus subtilis strain NIB353]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=635293 LRO88_RS08090 WP_003232406.1 1518662..1519126(-) (kre) [Bacillus subtilis strain NIB353]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTTTTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1