Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   PA1R_RS04875 Genome accession   NC_022806
Coordinates   1087740..1090454 (-) Length   904 a.a.
NCBI ID   WP_023518758.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PA1R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082740..1095454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA1R_RS04850 (PA1R_gp0949) - 1083046..1083705 (-) 660 WP_023517820.1 SPOR domain-containing protein -
  PA1R_RS04855 (PA1R_gp0950) folC 1083709..1084998 (-) 1290 WP_003104198.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  PA1R_RS04860 (PA1R_gp0951) accD 1084995..1085867 (-) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  PA1R_RS04865 (PA1R_gp0952) - 1086136..1086771 (-) 636 WP_023517821.1 phosphoribosylanthranilate isomerase -
  PA1R_RS04870 (PA1R_gp0953) truA 1086861..1087718 (-) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  PA1R_RS04875 (PA1R_gp0954) fimV 1087740..1090454 (-) 2715 WP_023518758.1 motility hub landmark protein FimV Machinery gene
  PA1R_RS04880 (PA1R_gp0955) - 1090623..1091633 (-) 1011 WP_003115016.1 aspartate-semialdehyde dehydrogenase -
  PA1R_RS04885 (PA1R_gp0956) asd 1091735..1092847 (-) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  PA1R_RS04890 (PA1R_gp0957) leuB 1092917..1093999 (-) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  PA1R_RS04895 (PA1R_gp0958) - 1094058..1094819 (-) 762 WP_003452681.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 904 a.a.        Molecular weight: 95512.62 Da        Isoelectric Point: 3.9584

>NTDB_id=63529 PA1R_RS04875 WP_023518758.1 1087740..1090454(-) (fimV) [Pseudomonas aeruginosa PA1R]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEE
AQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEP
QRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLDDLSLDD
SGHAAKPDAAGQDLDDAFDLSLDDLGGGDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDLDFGLDFAELAETPSQ
PKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSLADEPTEPAAPEKGED
SFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYIDMGDSEGARDI
LDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2715 bp        

>NTDB_id=63529 PA1R_RS04875 WP_023518758.1 1087740..1090454(-) (fimV) [Pseudomonas aeruginosa PA1R]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGTGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCC
CGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGAGCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGA
TCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAA
GCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGAC
CCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCTGCGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGG
GCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCG
CAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAA
CGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCG
CGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTCGACGAC
AGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGG
CGGCGACGTGCAGGCCGACCTCAAGTCCGACAGCGGGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGG
CCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGCTGGCAGAGACTCCGAGCCAA
CCCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCT
TTCGCTGAACGACGAGGTGCCCGCCGCGGCACCCGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGG
CGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGAC
AGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTTGATGAGCCGAAGAGCGCGGC
GCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCG
GTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATC
CTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

97.824

100

0.994

Multiple sequence alignment