Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LRO88_RS06610 Genome accession   NZ_CP089148
Coordinates   1252550..1252741 (+) Length   63 a.a.
NCBI ID   WP_003224559.1    Uniprot ID   G4NWD2
Organism   Bacillus subtilis strain NIB353     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247550..1257741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS06580 argF 1248413..1249372 (+) 960 WP_046160277.1 ornithine carbamoyltransferase -
  LRO88_RS06585 yjzC 1249458..1249637 (+) 180 WP_003245356.1 YjzC family protein -
  LRO88_RS06590 yjzD 1249684..1249869 (-) 186 WP_003245236.1 YjzD family protein -
  LRO88_RS06595 - 1250118..1250852 (+) 735 WP_003245223.1 hypothetical protein -
  LRO88_RS06600 - 1250934..1251491 (+) 558 WP_046160278.1 hypothetical protein -
  LRO88_RS06605 med 1251582..1252535 (+) 954 WP_014476425.1 transcriptional regulator Med Regulator
  LRO88_RS06610 comZ 1252550..1252741 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  LRO88_RS06615 yjzB 1252771..1253010 (-) 240 WP_003232972.1 spore coat protein YjzB -
  LRO88_RS06620 fabH 1253175..1254113 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  LRO88_RS06625 fabF 1254136..1255377 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  LRO88_RS06630 yjaZ 1255453..1256238 (+) 786 WP_041351865.1 DUF2268 domain-containing protein -
  LRO88_RS06635 appD 1256430..1257416 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7214.27 Da        Isoelectric Point: 4.2564

>NTDB_id=635285 LRO88_RS06610 WP_003224559.1 1252550..1252741(+) (comZ) [Bacillus subtilis strain NIB353]
MQHEKSLEFLQIAMKYLPEAKEQLEKSGIELSMEAIQPFMNLFTTVMAEAYELGKSDAKSETE

Nucleotide


Download         Length: 192 bp        

>NTDB_id=635285 LRO88_RS06610 WP_003224559.1 1252550..1252741(+) (comZ) [Bacillus subtilis strain NIB353]
ATGCAGCACGAAAAATCACTTGAATTCTTGCAAATTGCCATGAAATATCTCCCTGAAGCGAAAGAACAGCTTGAGAAATC
AGGCATTGAGCTCTCAATGGAGGCCATCCAGCCGTTTATGAATCTATTTACAACGGTAATGGCGGAAGCTTATGAGCTTG
GCAAGTCTGATGCTAAATCTGAAACAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

100

100

1