Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LRO88_RS06145 Genome accession   NZ_CP089148
Coordinates   1162077..1162655 (+) Length   192 a.a.
NCBI ID   WP_231834226.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157077..1167655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS24280 - 1157588..1158103 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  LRO88_RS24285 - 1158344..1158970 (-) 627 Protein_1147 protoglobin domain-containing protein -
  LRO88_RS06130 comW 1159025..1160554 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  LRO88_RS06135 yhxC 1160666..1161523 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  LRO88_RS06140 yhzC 1161551..1161784 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  LRO88_RS06145 comK 1162077..1162655 (+) 579 WP_231834226.1 competence transcription factor ComK Regulator
  LRO88_RS06150 yhxD 1162700..1163599 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  LRO88_RS06155 yhjA 1163816..1164085 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  LRO88_RS06160 yhjB 1164128..1165597 (-) 1470 WP_032725349.1 sodium:solute symporter family protein -
  LRO88_RS06165 yhjC 1165594..1165794 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  LRO88_RS06170 - 1165993..1166364 (-) 372 WP_014476361.1 hypothetical protein -
  LRO88_RS06175 yhjE 1166516..1167139 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  LRO88_RS06180 lepB 1167141..1167647 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22441.74 Da        Isoelectric Point: 7.7153

>NTDB_id=635281 LRO88_RS06145 WP_231834226.1 1162077..1162655(+) (comK) [Bacillus subtilis strain NIB353]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVIKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=635281 LRO88_RS06145 WP_231834226.1 1162077..1162655(+) (comK) [Bacillus subtilis strain NIB353]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGATAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995