Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LRO88_RS05070 Genome accession   NZ_CP089148
Coordinates   970005..970799 (+) Length   264 a.a.
NCBI ID   WP_021481166.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 965005..975799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS05040 sxzA 965844..966875 (+) 1032 WP_159376722.1 FecCD family ABC transporter permease -
  LRO88_RS05045 yfhB 966990..967871 (+) 882 WP_159376723.1 PhzF family phenazine biosynthesis isomerase -
  LRO88_RS05050 yfhC 967959..968543 (+) 585 WP_003243940.1 nitroreductase family protein -
  LRO88_RS05055 yfhD 968582..968773 (-) 192 WP_003233561.1 YfhD family protein -
  LRO88_RS05060 yfhE 968840..968950 (-) 111 WP_003223230.1 YfhE family protein -
  LRO88_RS05065 yfhF 969005..969916 (-) 912 WP_103803364.1 TIGR01777 family oxidoreductase -
  LRO88_RS05070 recX 970005..970799 (+) 795 WP_021481166.1 recombination regulator RecX Regulator
  LRO88_RS05075 yfhH 970801..971115 (+) 315 WP_049140592.1 YfhH family protein -
  LRO88_RS05080 yfhI 971258..972451 (+) 1194 WP_003243500.1 MFS transporter -
  LRO88_RS05085 sspK 972483..972635 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  LRO88_RS05090 yfhJ 972760..973029 (+) 270 WP_003243789.1 YfhJ family protein -
  LRO88_RS05095 yfhK 973174..973692 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  LRO88_RS05100 spdL 973777..974109 (+) 333 WP_049140590.1 SdpC immunity protein SpdL -
  LRO88_RS05105 ephM 974096..974956 (+) 861 WP_087614456.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31025.29 Da        Isoelectric Point: 6.6686

>NTDB_id=635276 LRO88_RS05070 WP_021481166.1 970005..970799(+) (recX) [Bacillus subtilis strain NIB353]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQIRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=635276 LRO88_RS05070 WP_021481166.1 970005..970799(+) (recX) [Bacillus subtilis strain NIB353]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGATAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996