Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LRO88_RS02225 Genome accession   NZ_CP089148
Coordinates   407159..407608 (-) Length   149 a.a.
NCBI ID   WP_160245378.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 402159..412608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS02185 - 402598..402795 (+) 198 WP_122060560.1 hypothetical protein -
  LRO88_RS02190 - 402831..403151 (+) 321 Protein_389 RDD family protein -
  LRO88_RS02195 yckD 403233..403565 (+) 333 WP_032724908.1 YckD family protein -
  LRO88_RS02200 - 403693..404115 (+) 423 WP_170939093.1 MarR family winged helix-turn-helix transcriptional regulator -
  LRO88_RS02205 - 404103..404444 (+) 342 WP_032724911.1 DUF3147 family protein -
  LRO88_RS02210 - 404463..405191 (+) 729 WP_021481826.1 AAA family ATPase -
  LRO88_RS02215 bglC 405264..406697 (+) 1434 WP_231834105.1 6-phospho-beta-glucosidase -
  LRO88_RS02220 nin/comJ 406734..407132 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  LRO88_RS02225 nucA/comI 407159..407608 (-) 450 WP_160245378.1 DNA-entry nuclease Machinery gene
  LRO88_RS02230 tlpC 407776..409497 (-) 1722 WP_160245377.1 methyl-accepting chemotaxis protein TlpC -
  LRO88_RS02235 hxlB 409608..410165 (-) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  LRO88_RS02240 hxlA 410171..410803 (-) 633 WP_122895017.1 3-hexulose-6-phosphate synthase -
  LRO88_RS02245 hxlR 411035..411397 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16455.45 Da        Isoelectric Point: 4.5282

>NTDB_id=635271 LRO88_RS02225 WP_160245378.1 407159..407608(-) (nucA/comI) [Bacillus subtilis strain NIB353]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSLTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=635271 LRO88_RS02225 WP_160245378.1 407159..407608(-) (nucA/comI) [Bacillus subtilis strain NIB353]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCTAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973