Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   N8E87_RS11165 Genome accession   NZ_CP104917
Coordinates   2289711..2291555 (+) Length   614 a.a.
NCBI ID   WP_264244792.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2284711..2296555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS11145 (N8E87_11145) - 2285883..2287682 (+) 1800 WP_264244787.1 alpha/beta hydrolase -
  N8E87_RS11150 (N8E87_11150) lysA 2287812..2289062 (-) 1251 WP_264244788.1 diaminopimelate decarboxylase -
  N8E87_RS11155 (N8E87_11155) - 2289073..2289192 (-) 120 WP_264244790.1 LPS translocon maturation chaperone LptM -
  N8E87_RS11160 (N8E87_11160) cyaY 2289340..2289648 (+) 309 WP_017806692.1 iron donor protein CyaY -
  N8E87_RS11165 (N8E87_11165) recQ 2289711..2291555 (+) 1845 WP_264244792.1 DNA helicase RecQ Machinery gene
  N8E87_RS11170 (N8E87_11170) - 2291647..2292825 (+) 1179 WP_264244795.1 acetyl-CoA carboxylase biotin carboxylase subunit family protein -
  N8E87_RS11175 (N8E87_11175) - 2292834..2293589 (+) 756 WP_264244796.1 esterase family protein -
  N8E87_RS11180 (N8E87_11180) - 2293629..2294453 (-) 825 WP_264244798.1 alpha/beta hydrolase -
  N8E87_RS11185 (N8E87_11185) gpt 2294505..2294969 (-) 465 WP_035689227.1 xanthine phosphoribosyltransferase -
  N8E87_RS11190 (N8E87_11190) - 2295094..2296548 (+) 1455 WP_264244801.1 aminoacyl-histidine dipeptidase -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 69762.99 Da        Isoelectric Point: 8.5034

>NTDB_id=635200 N8E87_RS11165 WP_264244792.1 2289711..2291555(+) (recQ) [Avibacterium paragallinarum strain AP-2]
MEKNTALKVLNEVFGYQSFRNGQEEVINAALSHQDSLVIMATGNGKSLCYQIPALCFSGLTLVISPLISLMKDQVDQLLA
NGIEVDYLNSTQTFEQQQIVQNKAISGQLKLLYISPEKAMTTSFFQFISHCQVSFIAIDEAHCISQWGHDFRPEYTQLGG
LKRCFPNAPIMALTATADSATRQDILHHLQLDNPHIYIGSFDRPNIRYTLVEKFKPMEQLCQFVLGQKGKSGIVYCNSRN
KVERLAESLRKKGVAAQAYHAGMEASQREQVQRAFQRDNVQVVVATVAFGMGINKSNVRFVAHFDLPRSIEAYYQETGRA
GRDDLPAEAVLFYEPADYAWLQKMLLEKPESPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQAPCKNCDICLDPP
KKYDGLIDAQKVMSTIYRVGQMFGVHYVIGVLRGMQNQKIKDNQHDQLSVYGIGKDKSKEYWQSVIRQLIHLGLVQQVMN
QFHSVLQLTENARPILRGEQPLELAMPRVSSIMTAQNAQKSAVQNYDKDLFARLRFLRKQIADKENIPPYIVFNDATLQE
MAQYQPTSKREMLQINGVGATKLERFGQAFLHIIQEHKSLSTKNSQSLKLSNEK

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=635200 N8E87_RS11165 WP_264244792.1 2289711..2291555(+) (recQ) [Avibacterium paragallinarum strain AP-2]
ATGGAAAAAAACACCGCACTTAAGGTTTTGAACGAGGTTTTTGGTTACCAATCTTTCCGCAATGGACAAGAAGAAGTGAT
CAACGCCGCCCTTTCACACCAAGATAGCCTTGTGATTATGGCAACGGGAAACGGAAAATCCCTTTGCTATCAAATTCCTG
CACTTTGCTTTTCGGGGCTAACCTTAGTCATTTCGCCGCTGATTTCCTTAATGAAAGATCAAGTGGATCAACTGCTTGCC
AACGGTATTGAAGTGGATTATCTCAATTCCACACAAACCTTTGAGCAGCAGCAAATCGTACAAAATAAGGCGATTTCAGG
GCAGCTCAAATTGCTTTATATTTCGCCCGAAAAGGCGATGACAACCAGTTTTTTCCAATTTATTTCCCATTGCCAAGTGA
GCTTCATTGCCATTGACGAAGCCCATTGTATTTCCCAATGGGGACACGATTTTCGTCCTGAATACACCCAGCTTGGCGGC
TTAAAACGTTGCTTTCCCAATGCACCAATAATGGCGCTCACCGCCACCGCAGACAGTGCCACAAGGCAAGATATTTTGCA
CCATTTGCAACTGGATAATCCGCATATTTATATCGGCAGCTTTGATCGCCCAAATATTCGCTATACCTTGGTGGAAAAAT
TTAAGCCAATGGAGCAGCTATGCCAATTTGTACTAGGGCAGAAGGGCAAAAGTGGCATCGTTTATTGCAACAGCCGCAAT
AAAGTGGAACGCTTGGCGGAAAGTTTGCGCAAAAAAGGCGTGGCAGCGCAAGCCTATCACGCAGGAATGGAAGCCAGCCA
GCGCGAACAAGTGCAGCGTGCCTTTCAGCGTGATAATGTGCAAGTAGTGGTGGCAACCGTTGCTTTTGGAATGGGCATTA
ACAAATCCAACGTGCGATTTGTAGCACATTTTGATTTGCCACGCAGTATCGAGGCGTATTACCAAGAAACAGGGCGCGCA
GGGCGTGATGACTTGCCTGCTGAAGCCGTGCTGTTTTACGAACCTGCCGATTATGCGTGGCTACAAAAAATGCTGCTGGA
AAAACCAGAAAGCCCGCAGCGCCAAATTGAACAGCATAAATTAGAAGCCATCGGCGAATTTGCCGAAAGTCAAACCTGCC
GCCGTTTAGTCTTGCTGAATTATTTTGGCGAACATCGCCAAGCACCGTGCAAAAACTGCGATATTTGCCTTGATCCGCCG
AAAAAATATGATGGCTTAATTGACGCGCAAAAAGTAATGTCCACTATTTATCGTGTGGGGCAAATGTTCGGCGTGCATTA
TGTGATCGGCGTGCTGCGCGGAATGCAAAATCAAAAAATTAAAGATAATCAGCACGATCAGCTCAGCGTGTACGGCATTG
GCAAAGACAAAAGCAAAGAATATTGGCAATCGGTGATTCGCCAGCTCATTCATCTTGGGCTTGTGCAACAAGTGATGAAT
CAATTTCACTCCGTGTTACAACTGACGGAAAACGCACGCCCAATTTTGCGTGGTGAACAGCCCTTAGAGCTGGCAATGCC
AAGGGTTTCCTCCATTATGACCGCGCAAAACGCACAAAAAAGTGCGGTGCAAAATTACGACAAAGATCTCTTTGCTCGCC
TGCGTTTCTTACGCAAACAAATTGCCGACAAGGAAAATATCCCCCCTTATATTGTGTTCAACGATGCTACCTTGCAAGAA
ATGGCACAATATCAACCCACCAGCAAGCGCGAAATGCTACAAATCAACGGCGTGGGCGCAACCAAATTAGAGCGCTTCGG
GCAAGCATTCCTGCATATTATCCAAGAGCATAAATCACTCAGCACAAAAAACAGCCAGTCGCTTAAATTGTCTAACGAAA
AATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(336-397)

HRDC domain (HRDC)

(528-594)

RQC domain (RQC)

(399-509)

DEAD/DEAH box helicase (DEAD)

(22-179)

Helicase conserved C-terminal domain (Helicase_C)

(218-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.399

97.557

0.384