Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N8E87_RS07110 Genome accession   NZ_CP104917
Coordinates   1414458..1415063 (+) Length   201 a.a.
NCBI ID   WP_264243674.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1409458..1420063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS07085 (N8E87_07085) - 1410014..1411225 (-) 1212 WP_264243670.1 integrase arm-type DNA-binding domain-containing protein -
  N8E87_RS07095 (N8E87_07095) secG 1411535..1411873 (-) 339 WP_035685027.1 preprotein translocase subunit SecG -
  N8E87_RS07100 (N8E87_07100) - 1411986..1413926 (-) 1941 WP_264243672.1 DNA topoisomerase III -
  N8E87_RS07105 (N8E87_07105) - 1414041..1414370 (+) 330 WP_035685032.1 YbaB/EbfC family nucleoid-associated protein -
  N8E87_RS07110 (N8E87_07110) recR 1414458..1415063 (+) 606 WP_264243674.1 recombination mediator RecR Machinery gene
  N8E87_RS07115 (N8E87_07115) metC 1415147..1416340 (-) 1194 WP_046098016.1 cystathionine beta-lyase -
  N8E87_RS07120 (N8E87_07120) - 1416499..1417101 (+) 603 WP_017806229.1 peroxiredoxin C -
  N8E87_RS07125 (N8E87_07125) - 1417254..1417538 (+) 285 WP_264243677.1 YcgL domain-containing protein -
  N8E87_RS07130 (N8E87_07130) hldE 1417962..1419389 (-) 1428 WP_035685042.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22059.22 Da        Isoelectric Point: 5.2968

>NTDB_id=635192 N8E87_RS07110 WP_264243674.1 1414458..1415063(+) (recR) [Avibacterium paragallinarum strain AP-2]
MQTSPLLETLIDALRCLPGVGPKSAQRMAYHLLQRDRSGGMDLARALTAAMSQIGHCEQCRTFTEEAVCTICENPRRQNS
GLLCVVEQPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLNRRLENEAFTEVILATNPTIEGEATANYIAEL
CMQRGIKVTRIAHGIPVGGELEMVDSNTLGHSFSGRREIQY

Nucleotide


Download         Length: 606 bp        

>NTDB_id=635192 N8E87_RS07110 WP_264243674.1 1414458..1415063(+) (recR) [Avibacterium paragallinarum strain AP-2]
ATGCAAACCAGTCCATTATTAGAAACGCTGATTGACGCATTACGCTGTTTACCTGGTGTGGGGCCGAAATCCGCCCAGCG
AATGGCTTATCATTTATTGCAACGCGATCGTAGCGGTGGAATGGATCTCGCCCGTGCCTTAACCGCCGCGATGTCGCAAA
TTGGGCATTGCGAACAATGTCGCACCTTCACCGAAGAAGCGGTCTGCACCATTTGCGAAAATCCACGCCGCCAAAATTCG
GGCTTGCTCTGTGTGGTGGAACAACCTTCCGATATTCAAGCCATTGAACAAACAGGGCAATTTTCAGGGCGTTATTTTGT
GCTGATGGGGCATTTATCCCCTCTAGATGGAATTGGTCCAAAAGAGATTGGACTGGATTTACTCAATCGCCGCTTAGAAA
ATGAAGCTTTTACCGAAGTTATTTTAGCCACCAACCCGACCATCGAGGGCGAAGCCACTGCCAATTATATTGCCGAGCTT
TGTATGCAACGAGGAATCAAAGTAACGCGTATCGCCCACGGCATTCCCGTTGGTGGCGAACTGGAAATGGTTGATAGCAA
TACCCTAGGGCATTCTTTTTCGGGACGGAGAGAGATTCAATATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

46.734

99.005

0.463
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.714

99.005

0.423