Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   LRR78_RS14605 Genome accession   NZ_CP089094
Coordinates   3042184..3045261 (-) Length   1025 a.a.
NCBI ID   WP_002745883.1    Uniprot ID   -
Organism   Microcystis aeruginosa FACHB-905 = DIANCHI905     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3037184..3050261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR78_RS14585 (LRR78_14585) - 3037424..3038461 (+) 1038 WP_002745895.1 AI-2E family transporter -
  LRR78_RS14590 (LRR78_14590) - 3038480..3039337 (+) 858 WP_002745893.1 amino acid ABC transporter substrate-binding protein -
  LRR78_RS14595 (LRR78_14595) - 3039350..3040756 (+) 1407 WP_002745891.1 DUF2079 domain-containing protein -
  LRR78_RS14600 (LRR78_14600) miaA 3040698..3041633 (-) 936 WP_002745889.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LRR78_RS14605 (LRR78_14605) pilL-C 3042184..3045261 (-) 3078 WP_002745883.1 hybrid sensor histidine kinase/response regulator Machinery gene
  LRR78_RS14610 (LRR78_14610) - 3045368..3046030 (+) 663 WP_002745881.1 class I SAM-dependent methyltransferase -
  LRR78_RS14620 (LRR78_14620) - 3046283..3047224 (+) 942 WP_002745879.1 homogentisate phytyltransferase -
  LRR78_RS14625 (LRR78_14625) - 3047237..3047503 (+) 267 WP_002745877.1 hypothetical protein -
  LRR78_RS14630 (LRR78_14630) - 3047516..3048256 (-) 741 WP_002745875.1 FkbM family methyltransferase -
  LRR78_RS14635 (LRR78_14635) - 3048824..3049192 (+) 369 WP_002745872.1 2Fe-2S iron-sulfur cluster-binding protein -
  LRR78_RS14640 (LRR78_14640) - 3049207..3050028 (+) 822 WP_002745870.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 1025 a.a.        Molecular weight: 112875.16 Da        Isoelectric Point: 4.3669

>NTDB_id=635188 LRR78_RS14605 WP_002745883.1 3042184..3045261(-) (pilL-C) [Microcystis aeruginosa FACHB-905 = DIANCHI905]
MMKPDWDHFFNEDLEQLLESLEDKDTDGDETLDELSFLFEQTSPPAARYGASLDQTLSFLPLEPELAELFSDSINWEETA
TNDLHSTRGTDPKSEPEDGDDLESLLLENATVQDSEAIITISNPNFYDSLEDLEAFLEKPTPPAQSPLPDIFESLEVLLS
ESTAGKPVAATEPLQRLESLEITLESSPEPEFKDLEKLLEETNPPVGLNNLRPLVGKAFEQTMRVPIKQLDNLSNLIGEL
VVKRNRLEQEQDRLRLFLDNLLNQVQHLSDVGVRMQDLYERSLLEGALLASRNTGGAIGYGGVQGKNQGNSAMTGELDAL
EIDRFTDFHLLSQEMIELIVRVRESASDLQFVLDETDQVTRSLRQATTQLQEGMTKSRMVPFSQTADHLPRAIHDISLKL
HKQAKLKVEGGGVLIDQMILENLNSPMIHLVNNAITHGIESPEERLAKGKPVHGTISVRAFLQGNQTVITVSDDGAGIDV
NLVKLKAIEKGLISDREAQNLSTQEVYEILFHPGFSTKDQADDFAGRGVGLDVVRTSLIDVRGTITIDSVLGQGTTFTLR
LPLTLSICKALCCVSNHARIGFSMDGVEDVRDFRARDIQMDRGGRRCVFWQNTLLPFQPLSDLLSYNRQLSRGSFYTGKQ
GEDSFAIVILRGGNNLLAVQVDRVIGEQEIVIKQIEGPIPKTAGIAGATVLGDGTVMPVGDVLELIDIASGRLRIDNGGL
WRQSVPPIDVEISQKSEAMVLIVDDSITVRELLSLSFSKTGYRVEQARDGQEAWEKLRGGLPCDIVFCDIEMPRMNGLEL
LSNLQKYPRLAAIPVALLTSRGSERHRQVAAKLGASGYFTKPYTEIDLLSAAERMIAGEVLLANSIKATSNQLSSSDTTI
IDSDSANLLAQSSPLVLIVDDSLIVREMLAISLVKAGYRIEQAQDGLEAWEKLQAGLACDLILCDIEMPRLNGLELLSRL
QEDEQLQGIPVAIIAYQGTQKMQHLAAAKGAKGYFVKPYIEDVLLSAAPRLIAGEVLIQKENSLD

Nucleotide


Download         Length: 3078 bp        

>NTDB_id=635188 LRR78_RS14605 WP_002745883.1 3042184..3045261(-) (pilL-C) [Microcystis aeruginosa FACHB-905 = DIANCHI905]
ATGATGAAACCCGACTGGGATCATTTCTTTAACGAAGATCTCGAACAGTTGTTAGAGAGTTTAGAAGACAAAGACACCGA
CGGTGACGAGACCCTAGACGAACTTAGCTTTTTATTTGAGCAGACTTCCCCGCCAGCGGCGAGGTATGGGGCTTCTCTTG
ACCAAACCCTGTCTTTCTTGCCCTTAGAACCGGAATTAGCAGAACTTTTTAGCGATAGCATCAATTGGGAAGAAACCGCC
ACTAATGATCTTCATTCTACCCGTGGGACCGATCCCAAGTCAGAACCAGAAGATGGGGATGATCTGGAATCGCTGCTGCT
AGAAAATGCAACAGTCCAGGACTCAGAGGCAATTATAACCATCAGCAACCCGAATTTTTACGACAGCCTCGAAGACTTAG
AGGCTTTTCTGGAAAAACCCACTCCACCAGCGCAATCGCCACTGCCGGACATCTTTGAATCCCTAGAGGTCCTCCTCTCG
GAATCCACAGCAGGGAAGCCGGTGGCGGCGACAGAACCTCTCCAACGGTTAGAATCACTGGAAATTACCCTGGAAAGCTC
CCCAGAGCCTGAATTCAAGGATTTAGAAAAACTCCTCGAAGAAACCAATCCACCGGTCGGGTTAAATAACCTGCGTCCCC
TTGTTGGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAACAATTGGACAACCTCAGCAATCTGATCGGGGAACTG
GTGGTTAAACGCAATCGCCTTGAACAGGAACAGGATCGCCTGCGTCTCTTTTTAGATAATTTGCTTAACCAAGTCCAACA
TCTCAGCGATGTGGGCGTTCGGATGCAGGATCTCTATGAAAGAAGTCTCCTAGAAGGGGCTTTACTGGCTAGTCGCAATA
CTGGCGGTGCCATCGGTTATGGTGGAGTTCAGGGAAAAAATCAGGGCAATTCGGCTATGACTGGGGAACTAGATGCTCTA
GAAATCGACCGTTTTACCGATTTCCATTTATTATCCCAAGAGATGATCGAATTGATCGTGCGCGTGCGAGAATCGGCCTC
TGATCTTCAATTTGTCCTCGATGAAACCGATCAGGTGACGCGCAGTCTGCGACAGGCTACCACCCAACTACAGGAAGGGA
TGACCAAATCGCGCATGGTTCCCTTTAGTCAAACTGCCGATCATCTACCCCGGGCAATTCACGATATTTCCCTGAAACTG
CACAAACAAGCCAAATTAAAAGTGGAAGGAGGGGGTGTTCTCATCGATCAGATGATCCTCGAAAATCTCAATAGTCCCAT
GATCCATCTGGTCAACAATGCGATCACCCACGGCATTGAATCACCCGAAGAACGCCTGGCCAAAGGCAAACCTGTCCACG
GTACGATCTCGGTCCGGGCATTCCTACAGGGCAATCAAACCGTGATCACCGTTAGTGATGATGGGGCCGGTATTGATGTT
AATCTGGTTAAACTTAAGGCGATCGAAAAAGGCCTGATCAGCGATCGGGAAGCTCAAAACCTCAGTACCCAAGAAGTCTA
TGAAATTCTTTTTCATCCCGGTTTTAGTACCAAAGATCAGGCCGATGATTTTGCCGGCCGTGGGGTGGGTTTAGATGTGG
TGCGTACCAGTTTAATCGATGTGCGCGGGACGATTACTATTGACTCGGTACTGGGCCAAGGAACCACTTTTACCCTCCGT
TTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTGTTGTGTTAGTAATCATGCTCGCATCGGTTTCTCCATGGACGGAGT
GGAAGATGTGAGGGATTTCCGGGCCAGGGATATCCAAATGGATCGGGGGGGACGGCGCTGCGTTTTCTGGCAAAACACTT
TACTACCTTTCCAACCCTTGAGCGATTTGCTTTCCTACAATCGACAACTTAGTCGCGGTAGTTTTTACACCGGCAAACAG
GGGGAAGACTCTTTTGCGATCGTGATCCTGCGCGGTGGTAATAATCTCCTCGCGGTACAGGTGGATCGAGTGATCGGGGA
ACAGGAGATCGTGATCAAACAGATCGAAGGACCGATTCCGAAAACGGCTGGGATTGCTGGGGCGACGGTTTTAGGCGATG
GTACGGTGATGCCCGTCGGCGATGTGTTAGAGTTGATCGACATCGCCAGCGGTCGTCTGCGTATCGATAACGGTGGTCTT
TGGCGCCAATCTGTACCGCCTATAGATGTGGAAATTAGCCAAAAATCCGAGGCTATGGTTCTGATTGTCGATGATTCAAT
TACTGTTCGGGAATTGCTCTCTTTAAGCTTTAGTAAAACTGGTTATCGTGTGGAACAGGCCCGGGATGGTCAAGAAGCTT
GGGAAAAATTACGCGGTGGTTTGCCCTGTGATATCGTTTTCTGTGATATCGAGATGCCCCGCATGAATGGCCTGGAATTA
CTGTCTAATTTGCAAAAATACCCCCGATTAGCGGCGATTCCCGTGGCTTTGTTGACTTCCCGAGGATCGGAACGTCATCG
TCAGGTGGCGGCGAAATTAGGGGCTAGTGGTTATTTTACCAAGCCCTACACGGAAATAGATTTACTCTCGGCAGCTGAAA
GAATGATTGCGGGGGAAGTATTACTAGCTAATAGTATTAAAGCGACTTCTAATCAGCTTTCATCCTCCGATACAACGATT
ATTGATAGTGATTCCGCTAATTTGTTAGCACAATCGAGTCCTCTCGTCTTGATTGTCGATGATTCGTTAATAGTGCGGGA
AATGTTAGCGATTTCTTTGGTTAAAGCTGGTTATCGCATTGAACAGGCCCAGGACGGTTTAGAAGCATGGGAAAAATTAC
AGGCCGGATTAGCTTGTGATCTGATTCTCTGCGATATCGAAATGCCTCGCCTGAATGGGTTAGAATTACTCTCTCGTCTG
CAAGAGGATGAACAACTTCAGGGGATACCAGTGGCGATAATTGCCTACCAAGGGACGCAAAAAATGCAGCATCTTGCCGC
CGCTAAAGGGGCAAAAGGTTATTTTGTCAAGCCCTATATTGAGGATGTTTTACTTTCAGCAGCCCCACGTTTAATCGCTG
GTGAGGTATTAATCCAGAAAGAAAATTCCCTGGATTAG

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(570-707)

Response regulator receiver domain (Response_reg)

(740-852)

Response regulator receiver domain (Response_reg)

(896-1006)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(221-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(427-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

62.609

89.756

0.562