Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LRR78_RS04680 Genome accession   NZ_CP089094
Coordinates   971235..973859 (+) Length   874 a.a.
NCBI ID   WP_002747175.1    Uniprot ID   A0AB33C537
Organism   Microcystis aeruginosa FACHB-905 = DIANCHI905     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 966235..978859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR78_RS04660 (LRR78_04660) - 966582..966806 (-) 225 WP_002747187.1 hypothetical protein -
  LRR78_RS04665 (LRR78_04665) hmpF 967400..969025 (-) 1626 WP_002747182.1 pilus motility taxis protein HmpF -
  LRR78_RS04670 (LRR78_04670) - 969871..970020 (+) 150 WP_002747179.1 hypothetical protein -
  LRR78_RS04675 (LRR78_04675) - 970611..971141 (+) 531 WP_002747177.1 chemotaxis protein CheW -
  LRR78_RS04680 (LRR78_04680) pilJ 971235..973859 (+) 2625 WP_002747175.1 methyl-accepting chemotaxis protein Machinery gene
  LRR78_RS04685 (LRR78_04685) - 973936..975147 (+) 1212 WP_036402385.1 glycosyltransferase -
  LRR78_RS04690 (LRR78_04690) - 975594..976931 (+) 1338 WP_002747170.1 AAA-like domain-containing protein -

Sequence

Protein


Download         Length: 874 a.a.        Molecular weight: 94788.65 Da        Isoelectric Point: 4.3470

>NTDB_id=635181 LRR78_RS04680 WP_002747175.1 971235..973859(+) (pilJ) [Microcystis aeruginosa FACHB-905 = DIANCHI905]
MPSGKEYAKLYGKANTAYCQGNLEDAAVIVKEMISKYPDDANVILLQGHIYVGLQQYSLAEGRYEKVLELAKNSANFFEL
VDYARRGLDQIQQSRFEAENGDFMIAAAESIAYSEAAFDPSQGFSNSLSGGSQAAAIERQQEVVDWDSGLFNDEDFGEPT
AGTVDSYGDDFGESEATAFSSLILAGSGSHGSQWSGDSADGEPPFPFLEAAEIDPLQEGWGGGLGSTGEATFTADWRENP
VTGRDQELSYADAPETSTFAIDPELPRRQAAKTDLNQGRVTQKRYEEDEARDFRELKLNDEDLDGFSQLRLTDIGEELGE
SELFTGSGEEALTAGFVPEPRASLNASSAVGEPSFHPSRLEIPDDKRDSHLGPVSERLFGPVVEVNPGKLAFFVNASLGK
KQLILAALAGITPVVLIFAVSTTSWLSAKVAPKPAPIPPAPASLSPWSQPKPAMMLLTGLGTFALTWLGLQLLISQIKRS
LDDLQSQFDHLSQGNFNAKATIYSEDEFGQLANRFNQMAKVVATITTLAQGRAAETERERKNLQRQVIRLLDDVEGAARG
DLTVEAEVSADVLGAVADAFNLTIQNLREIVRQVKKAAKQVNQASTNSESFARNQSSDALRMAEELAVTLNSVQMMTDSI
QRVAENAREAEEVARTSSITALKGGDSVERTVAGILQIRDTVSETARKVKRLAEASQEISKIVAVVSQIASRTNLLALNA
SIQAARAGDAGRGFAVVADEVRQLAYRSAKSLKEIEQIVLQIQSETGSVMMAMEEGIQQVIDVTERSEQAKKSLEDIIQV
SNRIDTLVRSITADTVKQRENSLNVAQVMQSVELTAQETSQESQQVAGSLQKLVSISRELLSSVERFKIDSEDN

Nucleotide


Download         Length: 2625 bp        

>NTDB_id=635181 LRR78_RS04680 WP_002747175.1 971235..973859(+) (pilJ) [Microcystis aeruginosa FACHB-905 = DIANCHI905]
ATGCCGTCAGGGAAAGAATATGCGAAACTCTATGGCAAGGCGAACACCGCCTATTGTCAGGGCAACCTTGAGGATGCCGC
CGTCATTGTCAAAGAAATGATCAGCAAGTATCCCGATGATGCCAACGTCATCCTTTTACAGGGACACATTTATGTCGGAC
TACAACAATACAGCTTGGCCGAGGGACGTTACGAAAAAGTGCTGGAATTGGCCAAAAATTCTGCCAATTTCTTTGAGCTG
GTAGATTATGCTCGACGGGGTCTCGATCAGATTCAGCAATCGCGTTTTGAAGCCGAGAATGGAGATTTTATGATCGCCGC
TGCGGAAAGCATTGCCTACAGCGAGGCAGCTTTCGATCCCAGTCAAGGTTTCAGCAATTCTTTGTCCGGGGGGTCGCAAG
CGGCTGCTATCGAGCGACAACAGGAGGTAGTGGACTGGGATAGTGGTCTTTTCAATGACGAGGATTTCGGAGAGCCTACG
GCGGGTACAGTCGATTCCTATGGCGATGATTTTGGGGAATCCGAGGCAACCGCCTTTAGTTCCCTCATCCTGGCTGGTTC
AGGCTCTCACGGTTCCCAGTGGTCCGGGGATTCTGCGGATGGAGAACCCCCTTTCCCCTTTTTGGAAGCAGCGGAGATTG
ACCCGCTGCAGGAAGGGTGGGGCGGTGGGTTAGGGTCAACGGGAGAAGCCACTTTTACGGCTGACTGGCGGGAAAATCCC
GTCACCGGTCGAGATCAGGAGTTATCCTATGCCGATGCCCCAGAAACAAGCACTTTTGCCATTGACCCGGAACTGCCCCG
CCGACAAGCGGCGAAAACTGACCTTAATCAGGGCAGAGTGACTCAAAAAAGATACGAGGAAGACGAAGCCAGAGATTTTA
GAGAACTAAAACTCAATGATGAGGATTTAGACGGTTTTTCCCAACTGCGTCTGACGGATATAGGCGAAGAACTGGGGGAA
TCGGAGCTATTTACCGGTTCGGGAGAGGAAGCTTTAACTGCTGGTTTTGTCCCCGAACCCAGGGCGAGCCTTAATGCCAG
TTCTGCTGTGGGAGAGCCTAGTTTTCATCCTTCTCGTCTAGAAATCCCCGATGACAAAAGAGATAGTCATCTTGGCCCTG
TTTCCGAGCGCCTGTTCGGGCCAGTGGTGGAAGTCAATCCGGGCAAATTAGCCTTTTTTGTCAACGCTTCTTTGGGCAAA
AAGCAACTAATTTTAGCGGCTTTAGCGGGTATTACCCCAGTGGTGTTAATTTTTGCTGTTAGCACCACCTCTTGGCTTTC
TGCAAAAGTTGCCCCCAAACCAGCCCCAATACCACCAGCACCAGCCAGCCTTTCTCCTTGGAGTCAACCGAAACCAGCCA
TGATGTTATTAACTGGATTGGGAACCTTTGCCCTGACTTGGCTAGGTTTACAGTTGCTAATTAGTCAAATTAAGCGCAGT
CTCGACGATTTGCAAAGCCAATTCGATCATCTTTCGCAAGGCAATTTTAACGCTAAAGCGACGATCTACTCGGAAGATGA
ATTTGGTCAACTGGCCAATCGTTTCAATCAGATGGCCAAGGTGGTGGCAACTATCACCACCTTAGCCCAAGGCCGCGCCG
CCGAAACGGAACGGGAACGGAAAAATCTACAAAGGCAAGTGATTCGACTTCTCGATGATGTGGAAGGAGCGGCTCGGGGG
GATCTGACCGTGGAAGCGGAGGTAAGTGCCGATGTTTTAGGGGCGGTGGCCGATGCTTTTAATTTGACGATCCAAAACCT
GCGCGAAATTGTCCGACAGGTGAAAAAAGCGGCAAAACAGGTGAATCAAGCCAGTACCAATAGTGAATCTTTCGCCCGCA
ATCAGTCTAGCGATGCCCTGCGGATGGCGGAGGAATTGGCCGTCACCCTTAATTCGGTACAGATGATGACCGACTCAATT
CAAAGGGTGGCAGAAAACGCCAGGGAAGCCGAAGAAGTCGCCCGCACTTCCTCGATTACCGCTCTCAAGGGGGGCGATTC
CGTGGAAAGAACCGTAGCGGGAATTCTGCAAATCCGCGACACGGTATCAGAAACGGCACGAAAAGTCAAGCGTTTGGCAG
AAGCTTCCCAGGAAATCTCGAAAATTGTCGCAGTAGTCTCTCAGATTGCCTCGCGAACCAATTTATTGGCTCTTAATGCC
TCGATTCAAGCGGCGCGAGCAGGAGATGCAGGCCGCGGTTTTGCGGTGGTGGCCGATGAGGTACGTCAGTTAGCCTATAG
ATCGGCTAAATCTCTTAAGGAAATTGAACAGATCGTTTTACAGATTCAATCGGAAACGGGTTCGGTAATGATGGCAATGG
AGGAAGGGATTCAACAGGTTATCGATGTCACCGAGCGCTCGGAACAGGCCAAGAAGTCCCTAGAAGATATTATCCAAGTT
TCTAACCGCATCGATACGCTGGTGCGATCGATTACCGCCGATACGGTCAAACAACGGGAAAATTCCCTCAATGTCGCCCA
AGTTATGCAGTCGGTGGAGTTAACCGCTCAGGAAACTTCCCAAGAATCTCAACAGGTGGCGGGTTCTTTGCAAAAATTGG
TGAGTATCTCCCGGGAGCTGCTTTCTTCGGTAGAACGGTTTAAGATAGACTCGGAAGATAATTAG

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(652-832)

HAMP domain (HAMP)

(472-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

49.464

100

0.527