Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   N8E87_RS02140 Genome accession   NZ_CP104917
Coordinates   427579..428085 (+) Length   168 a.a.
NCBI ID   WP_264245666.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 422579..433085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS02105 (N8E87_02105) surE 422804..423544 (-) 741 WP_264245660.1 5'/3'-nucleotidase SurE -
  N8E87_RS02110 (N8E87_02110) truD 423553..424560 (-) 1008 WP_264245661.1 tRNA pseudouridine(13) synthase TruD -
  N8E87_RS02115 (N8E87_02115) ispF 424564..425040 (-) 477 WP_264245663.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  N8E87_RS02120 (N8E87_02120) - 425173..425550 (-) 378 WP_017805060.1 hypothetical protein -
  N8E87_RS02125 (N8E87_02125) - 425693..426295 (+) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  N8E87_RS02130 (N8E87_02130) - 426296..426904 (+) 609 WP_264245665.1 sugar O-acetyltransferase -
  N8E87_RS02135 (N8E87_02135) - 426897..427355 (+) 459 WP_110479107.1 YqaA family protein -
  N8E87_RS02140 (N8E87_02140) luxS 427579..428085 (+) 507 WP_264245666.1 S-ribosylhomocysteine lyase Regulator
  N8E87_RS02145 (N8E87_02145) hemW 428153..429307 (-) 1155 WP_264245668.1 radical SAM family heme chaperone HemW -
  N8E87_RS02150 (N8E87_02150) rdgB 429307..429903 (-) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  N8E87_RS02155 (N8E87_02155) comE1/comEA 430041..430397 (-) 357 WP_264245671.1 helix-hairpin-helix domain-containing protein Machinery gene
  N8E87_RS02160 (N8E87_02160) - 430660..431973 (-) 1314 WP_264245673.1 NCS2 family permease -
  N8E87_RS02165 (N8E87_02165) - 432004..432144 (+) 141 WP_156127777.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19123.01 Da        Isoelectric Point: 5.5568

>NTDB_id=635172 N8E87_RS02140 WP_264245666.1 427579..428085(+) (luxS) [Avibacterium paragallinarum strain AP-2]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLVQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=635172 N8E87_RS02140 WP_264245666.1 427579..428085(+) (luxS) [Avibacterium paragallinarum strain AP-2]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACGGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGTACAGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726