Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   N8E87_RS00920 Genome accession   NZ_CP104917
Coordinates   186696..189524 (-) Length   942 a.a.
NCBI ID   WP_264245362.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 181696..194524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS00895 (N8E87_00895) hutX 182864..183373 (+) 510 WP_264245357.1 heme utilization cystosolic carrier protein HutX -
  N8E87_RS00900 (N8E87_00900) hutZ 183367..183885 (+) 519 WP_065233357.1 heme utilization protein HutZ -
  N8E87_RS00905 (N8E87_00905) mreD 183912..184394 (-) 483 WP_035687802.1 rod shape-determining protein MreD -
  N8E87_RS00910 (N8E87_00910) mreC 184394..185431 (-) 1038 WP_017805686.1 rod shape-determining protein MreC -
  N8E87_RS00915 (N8E87_00915) - 185504..186550 (-) 1047 WP_017805687.1 rod shape-determining protein -
  N8E87_RS00920 (N8E87_00920) uvrA 186696..189524 (-) 2829 WP_264245362.1 excinuclease ABC subunit UvrA Machinery gene
  N8E87_RS00925 (N8E87_00925) ssb 189702..190217 (+) 516 WP_017805689.1 single-stranded DNA-binding protein Machinery gene
  N8E87_RS12400 (N8E87_00930) - 190380..190775 (-) 396 WP_264245363.1 alpha/beta hydrolase -
  N8E87_RS12405 (N8E87_00935) - 190732..191367 (-) 636 Protein_181 alpha/beta hydrolase -
  N8E87_RS00940 (N8E87_00940) - 191894..192121 (-) 228 WP_039168118.1 hypothetical protein -
  N8E87_RS00945 (N8E87_00945) - 192106..193833 (-) 1728 WP_264245368.1 hypothetical protein -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104248.08 Da        Isoelectric Point: 7.2240

>NTDB_id=635161 N8E87_RS00920 WP_264245362.1 186696..189524(-) (uvrA) [Avibacterium paragallinarum strain AP-2]
MEKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPNHHIPLAAQTISQMVDKVLALPEESRMMLLAPVVKDRKG
EHIKILEHIAAQGYLRARIDGEICDLSDPPTLELQKKHTIEVVVDRFKIRPDLATRLAESFETALELSGGTAIVASMDDP
QAEEFLFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNPSISLANGAIKGWDRRNFYYYQM
LTSLAKHYGFNVESPFEELPKKIQHIILHGSGKEEIEFQYMNDRGDVVLRRHSFEGILNNMARRYKETESMAVREELAKH
ISTRPCKDCGGSRLRQEARNVFIGETNLPEVSEKSIGEAFNFVDSLTLSGQRAQIADKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILAADHIIDI
GPGAGVHGGNVVAQGTAQEIMQDPNSLTGKFLSGKEKIEIPQKRTALDKKKILKLKGASGNNLKNVNLEIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQSALNRAENAQAAPYKSIDGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTINQVLDMTVEEAREFF
DAIPQIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLDVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKVKGSHTARFLKQILKK

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=635161 N8E87_RS00920 WP_264245362.1 186696..189524(-) (uvrA) [Avibacterium paragallinarum strain AP-2]
ATGGAAAAAATAGAAGTAAGAGGGGCGAGAACCCACAATTTAAAAAATATTAATTTAACCATCCCCCGCGATAAATTGAT
TGTGATCACTGGGCTATCTGGTTCAGGCAAATCCTCTCTAGCCTTTGACACCCTATATGCAGAAGGACAACGCCGTTATG
TAGAATCCCTGTCGGCTTATGCACGTCAATTTTTATCGTTGATGGAAAAACCAGACGTGGATCATATTGAAGGTTTATCC
CCCGCGATTTCTATTGAACAAAAATCAACATCTCACAACCCACGTTCTACAGTGGGAACAATCACGGAAATTCATGATTA
TTTGCGTTTATTATTTGCCCGTGTGGGGGAGCCTCGCTGCCCGAATCACCATATCCCTTTGGCAGCACAAACAATTAGCC
AAATGGTAGATAAAGTATTGGCATTACCTGAAGAAAGCCGAATGATGTTACTTGCCCCTGTAGTAAAAGATCGCAAAGGG
GAGCATATTAAGATTTTGGAACACATTGCGGCACAAGGCTATCTTCGAGCCAGAATTGACGGTGAAATCTGTGATTTATC
GGATCCTCCTACACTAGAATTACAGAAAAAACATACGATCGAAGTGGTGGTAGATCGCTTTAAAATTCGTCCAGATCTTG
CCACGCGTTTAGCTGAATCTTTTGAAACCGCATTAGAACTTTCTGGTGGTACCGCTATAGTGGCAAGTATGGATGATCCG
CAAGCTGAAGAGTTCCTTTTTTCTGCTAACTTTGCCTGTCCGCATTGTGGTTATTCTGTGCCAGAACTTGAGCCTCGCTT
GTTCTCTTTTAATAACCCTGCAGGTGCTTGTCCAACTTGTGATGGTTTAGGTGTACAACAATATTTTGATGAAAAACGAG
TGGTTCAAAACCCAAGTATTTCTCTAGCTAACGGGGCGATTAAGGGTTGGGATCGACGTAATTTCTATTATTATCAGATG
CTCACCTCATTGGCAAAACATTATGGTTTTAATGTGGAAAGCCCATTCGAAGAATTACCAAAAAAAATTCAACACATTAT
TCTGCACGGCTCAGGCAAAGAAGAGATTGAATTCCAATATATGAATGATCGCGGTGATGTCGTGCTACGCCGTCATAGCT
TTGAGGGCATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGGCGGTGCGTGAAGAATTAGCGAAACAT
ATCAGCACTCGCCCTTGTAAAGATTGCGGTGGGTCCCGCTTACGTCAAGAGGCTCGCAATGTGTTTATTGGGGAAACGAA
CCTCCCCGAAGTTTCTGAAAAAAGTATTGGGGAAGCCTTTAATTTTGTAGATAGCTTAACCTTAAGCGGTCAACGTGCCC
AAATTGCCGACAAAATTTTGAAAGAAATCAAAGAGCGGTTGCAATTTTTAGTCAATGTTGGCTTAAATTACCTCTCCCTT
TCCCGCTCGGCGGAAACCCTTTCTGGCGGTGAAGCACAACGTATTCGCCTCGCAAGCCAAATCGGAGCTGGTTTAGTAGG
GGTGATGTATGTACTTGATGAGCCTTCTATTGGCTTACATCAACGCGATAATGAGCGTTTGCTTAACACATTGATTCATC
TAAGAAATTTAGGAAATACAGTAATTGTGGTAGAACACGATGAAGATGCTATTCTTGCTGCGGATCATATTATTGATATT
GGACCAGGTGCGGGGGTACACGGCGGCAACGTTGTTGCTCAAGGCACAGCACAAGAAATCATGCAAGATCCAAATTCTTT
AACGGGTAAATTCTTATCTGGAAAGGAAAAAATAGAAATTCCGCAAAAACGCACCGCACTTGATAAAAAGAAAATCTTAA
AACTTAAAGGGGCTTCGGGCAACAACTTAAAAAATGTCAATTTAGAAATCCCCGTTGGATTATTTACTTGCGTCACCGGC
GTATCTGGTTCGGGCAAATCCACATTAATTAACGACACTTTATTTCCTTTAGCACAAAGTGCATTAAACCGTGCTGAAAA
CGCCCAAGCCGCACCATACAAATCGATCGATGGACTCGAATTTTTTGACAAAGTGATTGATATTGACCAAAGCCCGATTG
GACGTACACCGCGTTCAAATCCTGCTACTTATACGGGATTATTCACCCCTATCCGCGAATTATTCGCTGGTGTACCAGAA
GCTCGAGCAAGAGGCTACAATCCCGGTCGATTTAGCTTTAACGTGCGAGGCGGACGCTGTGAAGCCTGTCAAGGAGATGG
GGTAATCAAAGTAGAAATGCACTTTTTACCTGATGTTTATGTCCCTTGTGATCAATGCAAAGGAAAACGTTACAATCGTG
AAACCTTAGAAATTCGTTACAAAGGCAAAACGATTAACCAAGTGTTGGATATGACAGTGGAAGAAGCTCGTGAGTTTTTT
GATGCTATCCCACAAATTGCTCGCAAATTGCAAACCTTAATGGATGTTGGGCTTTCTTATATCCGTTTAGGGCAATCTTC
CACCACGCTTTCTGGTGGTGAAGCACAACGCGTAAAATTAGCCACCGAGCTGTCTAAACGAGATACGGGAAAAACATTGT
ATATTCTTGACGAGCCAACAACAGGTTTGCATTTTGCCGATATTAAACAACTGCTTGATGTCTTGCACCGCTTGCGTGAC
CAAGGTAATACGATTGTGGTGATTGAGCATAATTTAGATGTTATCAAAACTGCAGATTGGATTGTAGATCTTGGGCCTGA
AGGTGGTAGTGGAGGCGGGCAAATCATTGCGACAGGCACGCCAGAACAAGTTGCGAAGGTTAAAGGTTCGCATACAGCAC
GCTTCTTAAAACAAATACTCAAAAAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

58.298

99.788

0.582
  uvrA Streptococcus pneumoniae TIGR4

58.298

99.788

0.582
  uvrA Streptococcus pneumoniae D39

58.298

99.788

0.582